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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTGCATGCTGTGGCTTTCTGTGTGGATCTGGTTGTGATGGGGGATATCCCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatttccattttgccttggtagtttccacttggtaatcataattcataagaatggttactggttagactcgttagagacagaaatcttatgctc...

Basic information

species Glycine max
transcript GLYMA19G41120.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41120.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g02820.t01 (Vitis vinifera), 5'ss of exon 6
TCTTGCATGCTGTGGCTTTCTGTGTGGATCTGGTTGTGATGGGGGATATCCCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatttccattttgccttggtagtttccacttggtaatcataattcataagaatggttactggttagactcgttagagacagaaatcttatgctc-
  | ||||||||||||||| ||||||||  ||||||||||||||| |||||  | ||||| |||| ||| ||    ||||| |||||||||||||| ||||| ||    ||   |    |  |   | ||     || || ||       | |     |  || |   | |  ||  ||  |  |  |  |  |||| || 
CTTAGCATGCTGTGGCTTTTTGTGTGGAAGTGGTTGTGATGGGGGTTATCCTCTTTATGCATGGCGATATTTTATTCACCATGGTGTTGTCACTGAGGAGgttattttcttttttcagcctattacaattattcattagttattccggcacctttttcttattgcaaataattcttcttgcactct-atgttatatggtct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258700|gb|BE346847.1|BE346847
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|7925196|gb|AW831222.1|AW831222
EST:     CCTTGTATGCGTGGCAATACTTANCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|7796797|gb|AW782191.1|AW782191
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATAT
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATAT
EST: gi|254322390|gb|GR837804.1|GR837804
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|254320265|gb|GR831073.1|GR831073
EST:     AATAC-TAGCCCACCACGGTG-TGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: AATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|18848714|gb|BM567826.1|BM567826
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|7591427|gb|AW707160.1|AW707160
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGGTCTCATCCTGTTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|192330291|gb|FK020576.1|FK020576
EST:     CCTTGTATGCGTAGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|207787379|gb|GD756776.1|GD756776
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|192314667|gb|FK005949.1|FK005949
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|192312976|gb|FK003642.1|FK003642
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|6914718|gb|AW396248.1|AW396248
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|120493127|gb|EH221294.1|EH221294
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|10252856|gb|BE820622.1|BE820622
EST:     GGTGTTGTCACTGAAGAG                         TGCGACCCATA-NNTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: GGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|6454707|gb|AW185390.1|AW185390
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATANTTTGATCAAATTGGCTGTTCTCATCCTGGNTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|22522137|gb|BU080948.1|BU080948
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCT
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCT
EST: gi|254329734|gb|GR839287.1|GR839287
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|151407971|gb|EV277786.1|EV277786
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|9986531|gb|BE660639.1|BE660639
EST:     CTTGNATGCGTGGCAATACTTAGCCCACCACGGTGNTG-CACTTGAAGAG                         TGCGANCCATATTTTGATCAAAATTGGCTGGTCTCATCCTGGGTGTGAGC
genomic: CTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACT-GAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAA-TTGGCTGTTCTCATCCTGGTTGTGAGC
EST: gi|192312975|gb|FK003641.1|FK003641
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|23064266|gb|BU579039.1|BU579039
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|254320264|gb|GR831072.1|GR831072
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|24136646|gb|BU927156.1|BU927156
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGG
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGG
EST: gi|22524928|gb|BU083739.1|BU083739
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|192314666|gb|FK005948.1|FK005948
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|7692565|gb|AW760668.1|AW760668
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATGGTGATCAAATTGGCTGTTCTCATGCTGGTTGTGAGCCA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|14259461|gb|BG882369.1|BG882369
EST:     GCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
genomic: GCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGTTGTGAGCCA
EST: gi|21889139|gb|BQ742352.1|BQ742352
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAA
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAA
EST: gi|11688232|gb|BF595908.1|BF595908
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTAGATCAAAT-GGCT
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCT
EST: gi|24205547|gb|BU964800.1|BU964800
EST:     CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAG                         TGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGT
genomic: CCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatt ... tatgtggcagTGCGACCCATATTTTGATCAAATTGGCTGTTCTCATCCTGGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTGCATGCTGTGGCTTTCTGTGTGGATCTGGTTGTGATGGGGGATATCCCTTGTATGCGTGGCAATACTTAGCCCACCACGGTGTTGTCACTGAAGAGgtaatgcatttccattttgccttggtagtttccacttggtaatcataattcataagaatggttactggttagactcgttagagacagaaatcttatgctc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA