1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAGTCGCGAGTTTCTTTGGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatcaaatagttattttaggaatttgtctttttgaatcagttcagttgtataagctgccttgatttcgtcatcttctgtctttgcatgcttaat...
species | Glycine max |
transcript | GLYMA19G40930.4 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTTATTTGGCEST: gi|193522640|gb|FK478677.1|FK478677
genomic: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGT-ATTTGGC
EST: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|193430919|gb|FK398149.1|FK398149
genomic: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|193659280|gb|FK605947.1|FK605947
genomic: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAATATTTGGCAEST: gi|193330683|gb|FK296175.1|FK296175
genomic: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: TTGCAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|193616813|gb|FK569243.1|FK569243
genomic: TTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GGCAAGAAGGGCACACTGCTTTTACAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|193385256|gb|FK352718.1|FK352718
genomic: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGACEST: gi|193377536|gb|FK341060.1|FK341060
genomic: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGG-C
EST: CAAAGGAGGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|207844905|gb|GD817456.1|GD817456
genomic: CAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GTCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|9899427|gb|BE608395.1|BE608395
genomic: G-CAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|193533168|gb|FK493688.1|FK493688
genomic: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: CAAAGGAGGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|193325700|gb|FK288534.1|FK288534
genomic: CAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|193429100|gb|FK397646.1|FK397646
genomic: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|193360197|gb|FK325051.1|FK325051
genomic: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|207758541|gb|GD726795.1|GD726795
genomic: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: AAGGAGGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|208315695|gb|GE110565.1|GE110565
genomic: AAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
genomic: GGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTCGCGAGTTTCTTTGGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAGgtattgcatcaaatagttattttaggaatttgtctttttgaatcagttcagttgtataagctgccttgatttcgtcatcttctgtctttgcatgcttaat
- - - - - - - - - GCAAGA
- - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG