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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTATTGGGGCTTCCTTTCCTGGTTTCATATCCAGTTGCATACATATCAAGAGCCTTCAATCTTGGCCGTGTCTTCATCCATTTCTGgtacttattttttaagtgtgcactttggtgtgataactatgaagtatgaaccctgcaaacaaatttagcttttagtataatctgaagccctttttctctg...

Basic information

species Glycine max
transcript GLYMA19G39740.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39740.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g07720.2 (Oryza sativa), 5'ss of exon 4
ATATTATTGGGGCTTCCTTTCCTGGTTTCATATCCAGTTGCATACATATCAAGAGCCTTCAATCTTGGCCGTGTCTTCATCCATTTCTGgtacttat--------tttttaagtgtgcactttggtgtgataactatgaagtatga-accctgcaaacaaatttagcttttagtataatctgaagccctttttctctg------------------
 | || |||||  | || ||| || | ||| |||||||||  ||||| ||| |||| ||||||||||| |||||||||||||||||||||| |||||        | | |||   || | ||||      |      | || || |   |  |    | |  | |   | | | | |||    |     ||||  ||                   
GTTTTGTTGGGTATGCCATTCTTGTTATCACATCCAGTTGAGTACATCTCACGAGCATTCAATCTTGGGCGTGTCTTCATCCATTTCTGgtgcttataccatctttctctaatattgaagtttgaatcattctaagagtagcattatgactggttttctatatgaatatgtggcacaatacatattttatttttcctatacttcaatctttttcag

upper sequence: GLYMA19G39740.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g00130.t01 (Vitis vinifera), 5'ss of exon 8
ATATTATTGGGGCTTCCTTTCCTGGTTTCATATCCAGTTGCATACATATCAAGAGCCTTCAATCTTGGCCGTGTCTTCATCCATTTCTGgtacttattttttaagtgtgcactttggtgtgataactatgaagtatgaaccctgcaaacaaatttagctttta-gtataatctgaagccctttttctctg---
||  |  ||||||| |||||  | || ||| | ||||||||||| |||||||| || || |||||||| |||||||||||||| || |||||||  ||  ||||        ||     || |   |||||| || || |   | |  |     ||    ||  |    |  ||    ||   |     |   
ATTCTGGTGGGGCTACCTTTTATTGTATCACACCCAGTTGCATATATATCAAGGGCTTTTAATCTTGGGCGTGTCTTCATCCACTTTTGgtact--ttccttaacctgatggttgaaaatgttg-ttatgaacta-gatcttagtactctggactaatccttgtgccccacatggtaaccacatgagaagttg