1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCCATGAATACTTCTCCTGGTTCAGTTTCACCTGCTGGTGGAAATAACAGCTCTGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGTTGAAGgttgttatctatatcttatatgtgcttgactataaacgattgtgttcattgatctttggtacatgtatatttatgttttaccatcactcttaccttacaacaagaaatgttactttggtaattctatttctacttttttatcttccaacttag
species | Glycine max |
transcript | GLYMA19G39300.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTCTGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGTTGAAG GACCACCTGGTGCGAACCTATTTATTTATCACATACCTCAAGAATTTGGAGEST: gi|16280580|gb|BI944036.1|BI944036
genomic: CTCTGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGTTGAAGgttgttatct ... tccaacttagGACCACCTGGTGCGAACCTATTTATTTATCACATACCTCAAGAATTTGGAG
EST: CTCTGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGTTGAAG GACCACCTGGTGCGAACCTATTTATTTATCACATACCTCAAGAATTTGGAGEST: gi|58024953|gb|CX711694.1|CX711694
genomic: CTCTGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGTTGAAGgttgttatct ... tccaacttagGACCACCTGGTGCGAACCTATTTATTTATCACATACCTCAAGAATTTGGAG
EST: CTCTGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGTTGAAG GACCACCTGGTGCGAACCTATTTATTTATCACATACCTCAAGAATTTGGAG
genomic: CTCTGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGTTGAAGgttgttatct ... tccaacttagGACCACCTGGTGCGAACCTATTTATTTATCACATACCTCAAGAATTTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCATGAATACTTCTCCTGGTTCAGTTTCACCTGCTGGTGGAAATAACAGCTCTGCTGCATCTTCAGGTGCCAGCAAAAATTCTGGGGGTCAGGTTGAAGgttgttatctatatcttatatgtgcttgactataaacgattgtgttcattgatctttggtacatgtatatttatgttttaccatcactcttaccttacaacaagaaatgttactttggtaattctatttctacttttttatcttccaacttag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG