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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAGgtgtgcatttatattcacctctgatttaaactaacaaaattaaattag

Basic information

species Glycine max
transcript GLYMA19G39080.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39080.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0352g00020.t01 (Vitis vinifera), 5'ss of exon 7
TTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAGgtgtgcatttata----ttcacctctgatt---taaactaacaaa-attaaattag--------------------------------------------
|  ||||||||||||| ||||| || |||||| |||||||||||||  || | |||||||| || ||    ||  || |  | |||  |||  |||| | |     ||||  | | |||   ||   |  ||   |||||| |||                                            
TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCT--TACACAGAACAATTATGGgtaggcatctgttatctttcatttatcattgcttattttctcagtcattaaactagattttttgaattgagattttatactctggtaactgcaacttaac

upper sequence: GLYMA19G39080.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0319g00060.t01 (Vitis vinifera), 5'ss of exon 6
TTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAGgtgtgcatttat--------attcacctctgatttaaactaacaaaattaaattag--------------------------------------------
|  ||||||||||||| ||||| || |||||| |||||||||||||  || | |||||||| || ||  | ||   | |  | |||  |||  |||| | |        ||| | |  || ||            |||||| |||                                            
TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACATAGAACAATTATGGgtaggcatctgttatctttcatttatcattgcttattttctctgtcattaaactagattttttgaattgagattttatactctggtaactgcaacttaac

upper sequence: GLYMA19G39080.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0032g00670.t01 (Vitis vinifera), 5'ss of exon 7
TTACTGGAGTTTGGGGGCTTCTGGCCCTTCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTCCATATGCAAATGAGTTACAGgtgtgcatttata----ttcacctctgatt---taaactaacaa-aattaaattag--------------------------------------------
|  ||||||||||||| ||||| || |||||| |||||||||||||  || | |||||||| || ||  | ||  || |  | |||  |||  |||| |||     ||||  | | |||   ||   |  ||  ||||||| |||                                            
TAGCTGGAGTTTGGGGACTTCTAGCTCTTCACCTGGCTGATGATCCTATTTTACCTTTCAACTATGTCTCTTACACAGAACAATTATGGgtaggcatctattatctttcatttatcattgcttattttctcagtaattaaactagattttttgaattgagattttatactctggtaactgcaacttaat