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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAGgtaactagactgatgaagtaatggtacttgactctttcatttgatgaatggttcttcctcttaataatgtttggtgtgtgacag

Basic information

species Glycine max
transcript GLYMA19G38690.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G38690.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G35940.2 (Arabidopsis thaliana), 5'ss of exon 4
TTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAGgtaactagactgatgaagtaatggtacttgactctttcatttgatgaatggttcttcctcttaataatgtttggtgtgtgacag-
 || ||||||||||||||||||||||||||||| || |||||||| || ||| | |||||||||  |      ||||     |  |   | | |   | | || |  ||  ||| ||      | | || ||   |   |      
ATACCCTAAGGATTCGGACAAGCACATGCTAGCTAAGCAAACAGGACTCACTCGTAGCCAGgtacgtttcaaaatgattctttcttgtgttattaggttacttaagaaagcgtttttaagtaaatttattttctttaattatttag

upper sequence: GLYMA19G38690.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0105g00230.t01 (Vitis vinifera), 5'ss of exon 11
TTATCCTAAGGATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAGgtaactagactgatgaagtaatggtacttgactctttcatttgatgaatggttcttcctcttaat-aatgtttggtg-tgtgacag
||||||||||||||| |||||||||||||| || |||||||||||||| ||  |||| |||||       ||   |||     |||  ||      ||  ||||    ||  |     |||| ||  |  | || ||| |    |||
TTATCCTAAGGATTCAGACAAGCACATGCTCGCCAAACAAACAGGGCTCACCCGGAGTCAGgtg--cgcgcta--gaatcttgggttttttgtgtctttgtttg-cagattatgggaactctcaaccagagctttgtgataatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254330843|gb|GR842108.1|GR842108
EST:     ATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAG                         GTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTG
genomic: ATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAGgtaactagac ... tgtgtgacagGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTG
EST: gi|254318650|gb|GR828594.1|GR828594
EST:     ATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAG                         GTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTG
genomic: ATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAGgtaactagac ... tgtgtgacagGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTG
EST: gi|17152797|gb|BM142730.1|BM142730
EST:     ATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAG                         GTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTT
genomic: ATTCGGACAAGCACATGCTAGCAAAACAAACAGGGCTAACTAGGAGCCAGgtaactagac ... tgtgtgacagGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTT