Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAATTTGGTGTGTGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCACCACCAATTCCCCATGGTTCTCGGGTCAAGgtaatttttctcctgaacaaattattattttgttggatttggataagcttcatatatgttcttacaatccttgatagtctttgtttttagaggtgataca...

Basic information

species Glycine max
transcript GLYMA19G37750.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37750.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G36390.1 (Arabidopsis thaliana), 5'ss of exon 7
AATGAATTTGGTGTGTGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCACCACCAATTCCCCATGGTTCTCGGGTCAAGgtaatttttctcctgaacaaattattattttgttggatttggataagcttcatatatgttcttacaatccttgatagtctttgtttttagaggtgataca
|| || |||||||||||||| || ||  ||||||| ||||  ||||| |||||| ||||||||||||| || || || ||||| |  | |       | |  | |   || ||         |  ||||||  || |   |  |   |   ||||| || | |   |  |  |||      
AACGACTTTGGTGTGTGGGAAATATTTCTGCCAAATAATGCTGATGGCTCACCAGCAATTCCCCATGGCTCCCGTGTGAAGgttacatgttc-----atagttaacccttatgaaaacacatgcaaagctttgta-acacttatcgtacttttgattgtatgt-catgcattggtag----

upper sequence: GLYMA19G37750.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 7
AATGAATTTGGTGTGTGGGAGATCTTCTTGCCAAACAATGTGGATGGTTCACCACCAATTCCCCATGGTTCTCGGGTCAAGgtaatttttctcctgaacaaattattattttgttggatttggataagct-tcatatatgttcttacaatccttgatagtctttgtttttagaggtgataca------
|||||||||||||| ||||||||||| ||||| |||||    |||||||| ||  ||||||| ||||| || || || ||||||| |      |    |   | |||  ||  ||    ||  |  |  | ||| || | || |   ||     ||| ||||    |  |  | |   |  |      
AATGAATTTGGTGTTTGGGAGATCTTTTTGCCCAACAACACTGATGGTTCGCCTGCAATTCCTCATGGCTCACGTGTAAAGgtaactaa----caaggcgcttcattcattcattctgcttccaccaattatcacatgttttatcttaaag--agatggtctc-actggtgcaagcagtctatattat