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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGAACGAATGGGTTGTCACTGAAAAACTTGGTGATGCTCTCAAGACTAAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaatgagtattcttggctcgattatttgataactttcactgatttctaagtagtaaattttatatgatattgggctgctaacctatatttattgtttttgtgttcaaatatcattag

Basic information

species Glycine max
transcript GLYMA19G37480.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7924572|gb|AW830598.1|AW830598
EST:     AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCATGATTGGAGACAG                         GATTCACTTGTTGGAACTTGGTGTCACATTCTACCTCTTCTTTTGTGGCTG
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaatga ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
EST: gi|22928997|gb|BU546136.1|BU546136
EST:     AAAGCCTCGATTCAGGATGGGAGACAG                         GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
genomic: AAAGCCTCGATTCAGGATTGGAGACAGgtatgaatga ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
EST: gi|9898611|gb|BE607579.1|BE607579
EST:     AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAG                         GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaatga ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
EST: gi|151398114|gb|EV267992.1|EV267992
EST:     AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAG                         GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaatga ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGTGAACGAATGGGTTGTCACTGAAAAACTTGGTGATGCTCTCAAGACTAAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaatgagtattcttggctcgattatttgataactttcactgatttctaagtagtaaattttatatgatattgggctgctaacctatatttattgtttttgtgttcaaatatcattag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA