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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTCTATATCCCTTCCATCATCACTATTCTTAATGCAGTTGGAACTCCAAGgtcttgatttctcttgagttttgctctattatcaaatcacatgatccaattttaaagacaaggaacttgttttgcaagtaagagtttgttgactttattcattgtgttttctatgtttcag

Basic information

species Glycine max
transcript GLYMA19G37480.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37480.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g03990.t01 (Vitis vinifera), 5'ss of exon 7
TACCTGCAACAGTTTTGGTGCCTGAGGTTGTGGTCCCAAAGTGGGGAGCTGTCTATATCCCTTCCATCATCACTATTCTTAATGCAGTTGGAACTCCAAGgtcttgatttctcttgagttttgctctattatcaaatcacatgatccaattttaaagacaaggaacttgttttgcaagtaagagtttg-ttgactttattcattgtgttttctatgtttcag
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TACCAGCAACTGTTTTGGTTCCTGATGTTGAGGTTCCCAGGTGGGGAGCAGTTTATATCCCTACCATCATTACCATCCTCAATGCAGTTGGAACTCCAAGgt-ttggtttcttgcaagctcagttttcttctccattgggttgcataagcccatggttctcaaaatct------caactaaaagttcaatttgcttttaagactgcc---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151400209|gb|EV270023.1|EV270023
EST:     GTCTATATCCCTTCCATCATCACTATTCTTAATGCAGTTGGAACTCCAAG                         GTCACTCCATTTGATGGTCTTCTGGATCCTCTTTGAGAATGTCATGTCTCT
genomic: GTCTATATCCCTTCCATCATCACTATTCTTAATGCAGTTGGAACTCCAAGgtcttgattt ... tatgtttcagGTCACTCCATTTGATGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCT
EST: gi|58014554|gb|CX701296.1|CX701296
EST:     GTCTATATCCCTTCCATCATCACTATTCTTAATGCAGTTGGAACTCCAAG                         GTCACTCCATTTGATGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCT
genomic: GTCTATATCCCTTCCATCATCACTATTCTTAATGCAGTTGGAACTCCAAGgtcttgattt ... tatgtttcagGTCACTCCATTTGATGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCT