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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCGTTCCAAAGGATATGTTTGCCATGCTTCATCTTTTCTGTGCAACCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGgtaactgcttgatttctccttgtccctgtccttttatcaattagttcacattttcaaaactaacttttcgggatataatgcttctag

Basic information

species Glycine max
transcript GLYMA19G37310.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37310.4 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 5'ss of exon 5
AGGCGTTCCAAAGGATATGTTTGCCATGCTTCATCTTTTCTGTGCAACCTATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGgtaa-ctgcttgatttctccttgtccctgtccttttatcaattagttcacattttcaaaactaacttttcgggatataatgcttctag
 ||  || |||| ||||| |      |||||||||| |||||||| |||||||| || ||||| ||||||||||||||||| ||||||||||| || |||||||  |  |||  || || ||  || |      || ||| || ||    ||||| | |  | |      |   ||            
GGGTATTTCAAAAGATATATCATGTCTGCTTCATCTGTTCTGTGCCACCTATTCACATCTGCTGTTAGTTCTTGATGACATCGAGTTCTATGAAAAGCAGgtaaattagttgggttttctttcaccattgggaattgtca-ttggtatttattttaacatttgatgccatgcattag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208081249|gb|GD880293.1|GD880293
EST:     ATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAG                         ATTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCGTCAATGCTCAATACC
genomic: ATTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGgtaactgctt ... atgcttctagATTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCGTCAATGCTCAATACC