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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatatatccgttcatattatcaaattttccttgtaaatcagtgggcatcgtgtatatatttaaaaatgagattactttcaaactgacaaactttc...

Basic information

species Glycine max
transcript GLYMA19G35710.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35710.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g02310.1 (Oryza sativa), 5'ss of exon 5
CGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtat----ttatatatccgttcatattatcaaatt-ttccttgtaaa-tcagtgggcatcgtgtatatatttaaaaatgagattactttcaaac-tgacaaactttc
 ||||| || ||||||||||| || |||||||||||||| || || ||||| ||  | ||||| |||||||||||  |||||||  || |||| ||||||||||    || ||| |  |||  || ||  |   | || ||||||   | |      |  ||| | |  |||          || | ||||  | | |   |  |||
TGTGCTCTATTCATCAGTTGTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTGTGAAGACAGTGATCCGTTGGATGTGCTGGTTATAATGCAGgtatgtctttgtattttagttggtactagaatcctattgcttgtactcttaagaaaaacagtgcacaagtttctt-------ttcccttcagccattatgtaaattc

upper sequence: GLYMA19G35710.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G137930_T02 (Zea mays), 5'ss of exon 6
CGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtat-ttatatatccgttcatattatcaaattttcc----ttgtaaatcagtgggcatcgtgtatatatttaaaaatgagattactttcaaactgacaaactttc
 ||||| || |||||||||||||| |||||||||||||| || || ||||| ||  ||||||| |||||||||||  |||||||  || |||| ||||||||||  |   | |   |  |||| ||     ||  |    | ||| |||||| |  ||| ||  |||  ||    || || | |  |   || |  ||||  || 
TGTGCTGTATTCATCAGTTGTTTACCCTCACAACTATGGATTCATTCCTCGCACGCTTTGTGAAGACAGTGATCCTTTGGATGTACTGGTTATAATGCAGgtatgcttcttttttatatatatcattgggattcacaaaatggtacatcagtagtgatc-tgagtatccttgggcataagttgagct---aattttcaaatctt-

upper sequence: GLYMA19G35710.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G53620.1 (Arabidopsis thaliana), 5'ss of exon 5
CGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatatatccgttcatattatcaaattttcct-tgtaaatcagtgggcatcgtgtatatatttaaaaatgagattactttcaaactgacaaactttc-------
  | ||||||||||| || || || || |||||||||||||| || || |||||  |||||||||||||||| ||  | |||||  |  | ||||||||||||   | ||||   ||||||  ||        |||   ||| ||| |   |||  ||| | |  ||  |  |    ||       | |||| || ||||        
TATTCTTTACTCATCTGTCGTATACCCACACAACTATGGGTTCATTCCGCGTACCCTTTGTGAGGACAGTGACCCTATTGATGTTCTTGTCATTATGCAGgta---acatattttttcatacaattttgagaacctgcataattcatta--cataatgtttcttgttctattttgatttgtgc---atctgataagctttgaagaagt

upper sequence: GLYMA19G35710.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0040g02470.t01 (Vitis vinifera), 5'ss of exon 5
CGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatatatccgttc-atattatcaaattttccttgtaaatcagtgggcatcgtgtatatatttaaaaatgagattactttcaaactgacaaactttc-
 ||||| ||||| |||||||| || || ||||||||||| |||||||| |||||| | |||||||||| ||| ||| ||||||||||| |||| ||||||||||   ||   | |||  | ||     | | ||     |   |||       ||   | |||  | |  |    |  |  ||  ||||      | ||   
TGTGCTGTACTCTTCAGTTGTGTACCCCCACAACTATGGCTTTATCCCACGTACTCTCTGTGAGGACAATGACCCCATGGATGTCTTGGTTATCATGCAGgtatgcttaatgctgtttgacatgtgtcactgttttgaatgcgtcat--attttcacctgtatgctgattacaatgcatgtttggaaacaattttatttatc

upper sequence: GLYMA19G35710.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S46_53V6.1 (Physcomitrella patens), 5'ss of exon 6
CGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatatatccgttcatattatcaaattttccttgtaaatcagtgggcatcgtgtatatatttaaaaatgagattactttcaaactgacaaactttc----
  |  | |||||||||||||| ||||| ||||| |||||||| || || |||||| ||||||||||    |||||| | |||||  |  | |||||||||||| |  |  |  | ||  | ||  |  | |    ||  | ||  ||    ||  |||  ||     | | |||||||  | |   |  |  |||    |    
TATCTTGTACTCATCAGTTGTCTATCCACACAATTATGGGTTCATTCCACGTACTCTTTGTGAGGATGAGGATCCCATTGATGTTCTCGTCATTATGCAGgtactattcaagacttttttttttccttactaaatttcaacatttgt----attttgtgaatgagatagactgagatttttatagcaaaggtaaatgcacgtaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301012|gb|FG990112.1|FG990112
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|193399186|gb|FK361734.1|FK361734
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|193487362|gb|FK451853.1|FK451853
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|254335061|gb|GR844846.1|GR844846
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|9901982|gb|BE610950.1|BE610950
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|7589208|gb|AW704987.1|AW704987
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|193724545|gb|FK662691.1|FK662691
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTCTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|193555433|gb|FK514310.1|FK514310
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|193531554|gb|FK491388.1|FK491388
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|22523592|gb|BU082403.1|BU082403
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|207757093|gb|GD730051.1|GD730051
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|254335060|gb|GR844845.1|GR844845
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|151398751|gb|EV268622.1|EV268622
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|298189455|gb|HO037858.1|HO037858
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|193588246|gb|FK544037.1|FK544037
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTCTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|15000402|gb|BI321216.1|BI321216
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|8669991|gb|BE191098.1|BE191098
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|208156025|gb|GD954529.1|GD954529
EST:     GTACTATTTGTGAGGACAGTGATCCCCGGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|17964359|gb|BM271095.1|BM271095
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|120533838|gb|EH261971.1|EH261971
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|298182727|gb|HO031462.1|HO031462
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTTCTTTGGGCCAAAGCAATTGGTCTCATG
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATG
EST: gi|207833133|gb|GD801810.1|GD801810
EST:     GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAG                         GAGCCGGTTCTTCCAGGTTGCTTT
genomic: GTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGgtatttatat ... acttgaacagGAGCCGGTTCTTCCAGGTTGCTTT