Sequence
atgc intronic sequence ATGC exonic sequenceCGTAACCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATGgtaacatattttcatcagctcaagacgtgcagcccatgtacaatttgtgtttcttcgttatcttttaattcatttaaatgcttgttaatgatattacag
Basic information
species | Glycine max |
transcript | GLYMA19G35390.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G35390.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g43020.1 (Oryza sativa), 5'ss of exon 6
CGTAACCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATGgtaacatattttcatcagctcaagacgtgcagcccat--gtacaatttgtgtttcttcgttatcttttaattcatttaaatgcttgttaatgatat-tacag-----------------------
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CGTAATCTTGTCAAGCTGATCGGTATATGCATTGAACGGAGCACAAGGTGCTTGGTGTTTGAGCTTGTTCCAAACGGAAGTGTGGAGTCTCATCTGCACGgta-tgtacacttatttagtctacaccattggcatataagaatctttggtacattttcagcactttcctatgcttcattatacattgttgtgatctgcatatttacttctgttttgatgtttcag
upper sequence: GLYMA19G35390.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G20300.1 (Arabidopsis thaliana), 5'ss of exon 6
CGTAACCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATGgtaacatattttcatcagctcaagacgtgcagcc-catgtacaatttgtgtttcttcgttatcttttaatt--catttaaa--------tgcttgttaatgatattacag
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CGCAATCTTGTGAAACTGATTGGAATATGCATTGAAGGTCGTACACGTTGCTTGATTTATGAGCTCGTCCACAATGGGAGTGTTGAGTCCCACTTACACGgtgacatattcttttctctgcacttttaataacaatatatcccaattatatccatcacttctcgttgcatcaccacctaaaacctggctttccggttgttgacaaaacag
upper sequence: GLYMA19G35390.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g04710.t01 (Vitis vinifera), 5'ss of exon 3
CGTAACCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATGgtaacatattttcatcagctcaagacgtgcagcccatgt-acaatttgtgtttcttcgttatcttttaattcatttaaatgcttgttaatgatattacag------
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CGCAATCTTGTGAAACTGATTGGTATATGCATTGAAGGACACACACGCTGCCTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCTCACTTGCATGgtaa---atttctcactgccttggtcattcatttcctgttgaaaattgtgtt-ctgaagtatatgttggttaa--aaagttcaccattgtagtgttgaatcccactMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298198470|gb|HO040009.1|HO040009EST: CTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATG GTGACGACAAGATAAAGGGAATGCTAGATTGGGAAGCAAGGATGAAGATTG
genomic: CTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATGgtaacatatt ... gatattacagGTGACGACAAGATAAAGGGAATGCTAGATTGGGAAGCAAGGATGAAGATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTAACCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATCTGCATGgtaacatattttcatcagctcaagacgtgcagcccatgtacaatttgtgtttcttcgttatcttttaattcatttaaatgcttgttaatgatattacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT