Sequence
atgc intronic sequence ATGC exonic sequenceAGGTGAAGCATCCTCTCCAATATTTGTGTTGAAGACAAAGCGCTCCCTTCGTGCTGTGCATTTTCACCCTCATGCCGCACCATATCTTTTAACTGCAGAGgtgaatcaactattatgcttttggaatgctattctgaatgttagtttttagattttccctttggttaacatacttacattgatgtgtag
Basic information
species | Glycine max |
transcript | GLYMA19G35370.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G35370.3 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G353548_T04 (Zea mays), 5'ss of exon 7
AGGTGAAGCATCCTCTCCAATATTTGTGTTGAAGACAAAGCGCTCCCTTCGTGCTGTGCATTTTCACCCTCATGCCGCACCATATCTTTTAACTGCAGAGgtgaatcaactattatgcttttggaatgctattctgaatgttagtttttagattttccctttggttaacatacttacattgatgtgtag------
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AGATGATGCTTCTGTCCCAACCATCATACTAAGGACCCGCCGTTCGTTGAGAGCTGTGCATTTTCACCCGCATGGCGCTCCATATCTTCTAACAGCAGAGgtaga---aatatagaataacctgaggtctgcgcttatgttttcccttcaaatttcatgtttgctgtatgaatttacgcataacttcaatttcag
upper sequence: GLYMA19G35370.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 7
AGGTGAAGCATCCTCTCCAATATTTGTGTTGAAGACAAAGCGCTCCCTTCGTGCTGTGCATTTTCACCCTCATGCCGCACCATATCTTTTAACTGCAGAGgtgaatcaactattatgcttttggaatgctattctgaatgttagtttttagattttccctttggt---taacatacttacattgatgtgtag
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AGGGGAGACTTCGTCACCAACCATTATATTGAAGACAAGACGTTCACTTCGTGCTGTGCATTTTCATCCTCATGGTGCTCCAGTTCTCTTGACTGCAGAGgtgatt--attgttattatttttttttgaagtattggatttgattctttacttgtactgttgaatgcgttacattaatggactgatatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|105631908|gb|DW246239.1|DW246239EST: GTGCTGTGCATCTTCACCCTCATGCCGCACCATATCTTTTAACTGCAGAG GTCAATGATCTTGATTCTTCAGATTCCTCAATGACAGAGGCTACATCTCTT
genomic: GTGCTGTGCATTTTCACCCTCATGCCGCACCATATCTTTTAACTGCAGAGgtgaatcaac ... tgatgtgtagGTCAATGATCTTGATTCTTCAGATTCCTCAATGACAGAGGCTACATCTCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGTGAAGCATCCTCTCCAATATTTGTGTTGAAGACAAAGCGCTCCCTTCGTGCTGTGCATTTTCACCCTCATGCCGCACCATATCTTTTAACTGCAGAGgtgaatcaactattatgcttttggaatgctattctgaatgttagtttttagattttccctttggttaacatacttacattgatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG