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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAATATGAGTACATGCAGCAGGACTGGGCCTGCCTTGCTGTGATCTACACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAGgtgattccttgttttaaagttatttcccctccaatttatttttggaaaaaaactgttgtgtatagtttgcacatactttctcatttttggggggttaattttacttccttggtggtactggcattgcag

Basic information

species Glycine max
transcript GLYMA19G35140.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35140.3 (Glycine max), 5'ss of exon 2
lower sequence: AT1G04080.3 (Arabidopsis thaliana), 5'ss of exon 5
TTGAATATGAGTACATGCAGCAGGACTGGGCCTGCCTTGCTGTGATCTACACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAGgtgattccttgttttaaagttatttcccctccaatttatttttggaaaaaaactgttgtgtatagtttgcacatactttctcatttttggggggttaattttacttccttggtggtactggcattgcag
|||| ||||||||||||||||||||||||  | |  ||||  |||| |||||||||||||| |||||||||| |||| |  | ||| | ||||||||||||| |||  |  |  |    ||| |         |||  | | ||     ||   | |        |||      | | ||    || ||| | |  ||  | | ||                       
TTGAGTATGAGTACATGCAGCAGGACTGGAGCCGAGTTGCCTTGATTTACACCAGAATATTGGAGAATCCAATTCAAAATCTGGATAGATATTTCAGCAGgtaatttttactgattgcattaatc--------attattgtctgtgctgaattggatagagtctatttatgtggattgtcatggttatggagagaaaacatcatttga---------------------

upper sequence: GLYMA19G35140.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0005g04280.t01 (Vitis vinifera), 5'ss of exon 5
TTGAATATGAGTACATGCAGCAGGACTGGGCCTGCCTTGCTGTGATCTACACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAGgtg-attccttgttttaa-agttatttcccctccaatttatttttggaaaaaaactgttgtgtatagtttgcacatactttctcatttttggggggttaattttacttccttggtggtactggcattgcag
| |||||||||||    |||||||| ||| |  | |||||  |||||||||| || ||||| |||||||||||||| ||| | ||||| ||||| | |||||| ||  |||||||||| |  ||| |     |  |||||   ||| |  |     |||   | | | ||| | |         |||   | ||      ||||                           
TAGAATATGAGTATTCACAGCAGGAGTGGTCGCGTCTTGCAATGATCTACACGAGGATATTGGAGAATCCAAATCAGCAACTGGATCGCTATTTGAACAGgtggatctcttgttttaataactatatatttgcttatttacccttgcatta-----gtttactgttgcttgaagaagagggtggattgaggtggaaagtgttttt--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56173134|gb|CV997260.1|CV997260
EST:     ACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAG                         CTTCAAAGAGTTAGCTGGAAATCGTCCTTTATCAGAGTTACGAACTGCTGA
genomic: ACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAGgtgattcctt ... ggcattgcagCTTCAAAGAGTTAGCTGGAAATCGTCCTTTATCAGAGTTACGAACTGCTGA