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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAATATGAGTACATGCAGCAGGACTGGGCCTGCCTTGCTGTGATCTACACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAGgtgattccttgttttaaagttatttcccctccaatttatttttggaaaaaaactgttgtgtatagtttgcacatactttctcatttttggggggttaattttacttccttggtggtactggcattgcag

Basic information

species Glycine max
transcript GLYMA19G35140.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35140.3 (Glycine max), 5'ss of exon 2
lower sequence: AT1G04080.3 (Arabidopsis thaliana), 5'ss of exon 5
TTGAATATGAGTACATGCAGCAGGACTGGGCCTGCCTTGCTGTGATCTACACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAGgtgattccttgttttaaagttatttcccctccaatttatttttggaaaaaaactgttgtgtatagtttgcacatactttctcatttttggggggttaattttacttccttggtggtactggcattgcag
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TTGAGTATGAGTACATGCAGCAGGACTGGAGCCGAGTTGCCTTGATTTACACCAGAATATTGGAGAATCCAATTCAAAATCTGGATAGATATTTCAGCAGgtaatttttactgattgcattaatc--------attattgtctgtgctgaattggatagagtctatttatgtggattgtcatggttatggagagaaaacatcatttga---------------------

upper sequence: GLYMA19G35140.3 (Glycine max), 5'ss of exon 2
lower sequence: Vv07s0005g04280.t01 (Vitis vinifera), 5'ss of exon 5
TTGAATATGAGTACATGCAGCAGGACTGGGCCTGCCTTGCTGTGATCTACACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAGgtg-attccttgttttaa-agttatttcccctccaatttatttttggaaaaaaactgttgtgtatagtttgcacatactttctcatttttggggggttaattttacttccttggtggtactggcattgcag
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TAGAATATGAGTATTCACAGCAGGAGTGGTCGCGTCTTGCAATGATCTACACGAGGATATTGGAGAATCCAAATCAGCAACTGGATCGCTATTTGAACAGgtggatctcttgttttaataactatatatttgcttatttacccttgcatta-----gtttactgttgcttgaagaagagggtggattgaggtggaaagtgttttt--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56173134|gb|CV997260.1|CV997260
EST:     ACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAG                         CTTCAAAGAGTTAGCTGGAAATCGTCCTTTATCAGAGTTACGAACTGCTGA
genomic: ACCAGAATATTAGAGAATCCAAATCAACAATTAGATCGGTATTTCAGCAGgtgattcctt ... ggcattgcagCTTCAAAGAGTTAGCTGGAAATCGTCCTTTATCAGAGTTACGAACTGCTGA