Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACTGGACCAATGCTGCATTATGCAAATGGAAACTTAGTTACAGGAGATGCAGCAATGAAACCAAATGTCATACCTGTGCATAGAATTTGCATTGACTGgtatgctaacttgatattttgagtatgcattgcttgttgctatagcctcctagtctatatatttgatgacttgtgaagccacctaaaaacagataccgaa...

Basic information

species Glycine max
transcript GLYMA19G35010.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G35010.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g03940.t01 (Vitis vinifera), 5'ss of exon 2
CTACTGGACCAATGCTGCATTATGCAAATGGAAACTTAGTTACAGGAGATGCAGCAATGAAACCAAATGTCATACCTGTGCATAGAATTTGCATTGACTGgtatgctaactt-gatattttgagtat-gcattgcttgttgctatagcctcctagtctatatatttgatg-acttgtgaagccacctaaaaacagataccgaa
|||| |||||||||||||||||||| ||||||||   ||||  |  |        | |  |  | |||||||||| ||| ||||  |  ||  |||| ||||| | || ||| | |||||   ||   | ||| |    || | | |    ||| |  || |   ||||  |  | |||         ||||||   | |   
CTACGGGACCAATGCTGCATTATGCTAATGGAAAGCCAGTTCAATCATCCAACATATTTGATTCCAATGTCATACATGTTCATAAGAAATGTGTTGATTGgtaagttacctttggtatttaacgtggagtatttccaactgatgttggtgacta-tggatgttcatgatttaggtttgattgtgtaagaaaacaaccatct--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33388999|gb|CA852206.1|CA852206
EST:     GCAGCAATGAAACCAAATGTCATACCTGTGCATAGAATTTGCATTGACTG                         GGCACCACAAGTGTACTTTGTTGGTGAAGTTGTTAAGAATTTGAAGGCAGA
genomic: GCAGCAATGAAACCAAATGTCATACCTGTGCATAGAATTTGCATTGACTGgtatgctaac ... tggaatccagGGCACCACAAGTGTACTTTGTTGGTGAAGTTGTTAAGAATTTGAAGGCAGA