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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCACTTGGAGCTATTATGTATGAAATGTTAGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGgtaatattttctaaagaagtatttatacatattaagattaatgtttgattcacattcctttttagttctattttaacttgtaaatttaacaactctattt...

Basic information

species Glycine max
transcript GLYMA19G34920.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G34920.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 5'ss of exon 7
GTGGTCACTTGGAGCTATTATGTATGAAATGTTAGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGgtaatattttctaaagaagtatttatacatattaagattaatgtttgattcacattcctttttagttc-tattt---taacttgtaaat-ttaacaactctattt-------------------------------------------------------------------
||||||||||||||| || |||||||||||| ||||||| ||||| || || ||||||||||| || ||| |||| || || ||||| |||| |  |    |    |  |   ||    | || | |  ||||  | |||| |   | | | |  ||||   ||   ||||||         |  |||||                                                                   
GTGGTCACTTGGAGCAATCATGTATGAAATGCTAGTGGGCTATCCCCCATTCTATTCTGATGAGCCTATGACAACTTGCAGAAAGgtgatatatatttttcagacttgcagctatgaatatataatttcttgaccctcatttccactaattccacatttcagtagtctgtaaacaccttttccattatttaagaaaaaataaatcgtgtttgttcctgacattttttttaatttattgtgcccatatgggcacacag

upper sequence: GLYMA19G34920.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 5'ss of exon 7
GTGGTCACTTGGAGCTATTATGTATGAAATGTTAGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGgtaatattttctaaagaagtatttatacatattaa-gattaatgtttgattcacattcctttttagttctattttaacttgtaaatttaaca-actctattt
|||||||||||| ||||| |||||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||||||||||| | ||   ||   |     |  | || |||   |||  | | |  |  |  ||||   ||  ||   || | | || | | |||| |  ||||| |  
GTGGTCACTTGGTGCTATCATGTATGAAATGCTTGTGGGGTATCCACCTTTTTATTCTGATGATCCCATGTCAACATGTAGGAAGgtaa-acttgggaatacaactcattcagattttagtaatttctctgtattataagttccaagttc-ttgggttgtgaattatcattttaccctactctgtaa