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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACAgtatgaactgcattttcttttaatctttcctactgtatttctgttttgtactaagtgataaactttgctattttgatactttcccttatttcag

Basic information

species Glycine max
transcript GLYMA19G34430.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G34430.2 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g53110.1 (Oryza sativa), 5'ss of exon 7
GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACAgta------------tgaactgcattttc--ttttaatctttcctactgtatttctgttttgtactaa-gtgataaactttgctattttgatactttcccttatttcag---------------------------------------------
|| || |||||||||||||| ||||||||||| |||||| | || |||            | |   | |||| |  | | ||  |   |||    |     |  |    ||   ||    |||    |    |||| | ||     || |  ||                                             
GCATACTTCATGCAAATTGATGGCACATTAAACAAATTGACAACGgtaagttgaggcagctaagtcgaatttacaatatcaaaatgggctagcaaaacatggcctaaggcttttgtttacaacacaacatcgttgaaaattaatagtactctaggctttcaccctttgctgactgtatttgtctgctatactgtttcag

upper sequence: GLYMA19G34430.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0141g00590.t01 (Vitis vinifera), 5'ss of exon 7
GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACAgtatgaactgcattttcttttaatctttcctactgtatttctgttttgtactaagtgataaactttgctattttgatactttcccttatttcag---------
|| || || |||||||||||||||||||| ||||||||  |||| ||||| ||   ||||  || ||  |   | |  | | | | ||    ||   |  || ||| |  |||     | || ||    || |||  ||         
GCTTACTTTATGCAAATTGACGGCACATTGAATAAATTATCCACGgtatgcaccaaatttg-ttgtatacaggcttcttttttatttgaacagttgcatttg-taagcactgccgggat-attctcattctgattgaagcagactcac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10232059|gb|BE800947.1|BE800947
EST:     GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACA                         TTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG
genomic: GCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACAgtatgaactg ... cttatttcagTTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAG