Sequence
atgc intronic sequence ATGC exonic sequenceGAAAGATACTATTGGACCATGGGAGGAGAGACCTGGGCACCTTGGTGATGTTTGGAACTATTGGAGTGATGATGGAATTGGTTTTTTTGAGTATCTCCTGgtgagtattcttttacaactataattaaatttgtcctgctgaataaatataatatgatttaatatttcttgagcag
Basic information
species | Glycine max |
transcript | GLYMA19G30460.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G30460.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g20420.3 (Oryza sativa), 5'ss of exon 8
GAAAGATACTATTGGACCATGGGAGGAGAGACCTGGGCACCTTGGTGATGTTTGGAACTATTGGAGTGATGATGGAATTGGTTTTTTTGAGTATCTCCTGgtgagtattcttttacaactataattaaatttgtc--ctgctgaataaatataata---------tgatttaatatttcttgagcag---------
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GAGTGAAACCATTGGACCTTGGGAAGAGAGACCTGGTCACTTTAATGATGTTTGGAATTATTGGACTGATGATGGACTAGGCTTTTTTGAGTTCCTTCAAgtaagtaaaatgctccagcttggctcagaactgaaagcagccaaataattgcatcaactaaccattaagctgatacacgttgtttcattattgtag
upper sequence: GLYMA19G30460.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g03734.1 (Oryza sativa), 5'ss of exon 6
GAAAGATACTATTGGACCATGGGAGGAGAGACCTGGGCACCTTGGTGATGTTTGGAACTATTGGAGTGATGATGGAATTGGTTTTTTTGAGTATCTCCTGgtgagtattcttttacaactataattaaatttgtcctgctgaataaatataatatgatttaatatttcttgagcag---------------------------
||| || |||||||| |||||||| ||||||||||||||| ||| ||||||||| |||| |||| |||||||| |||| | || ||| | ||||| ||| | ||| || | | | || | | | || || | |||| || |||| | | | || | |
GAAGGAAACTATTGGTCCATGGGAAGAGAGACCTGGGCACTATGGAGATGTTTGGCACTACTGGACCGATGATGGCCTTGGGTATTATGACTTTCTCCAGgtatggattgattaatgtcaa--atgagttctctcttggtctcatcatatctgatcatttgtt-tacttcgaactgttcatgtcttcataaatcttgctgaag
upper sequence: GLYMA19G30460.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os11g03780.2 (Oryza sativa), 5'ss of exon 8
GAAAGATACTATTGGACCATGGGAGGAGAGACCTGGGCACCTTGGTGATGTTTGGAACTATTGGAGTGATGATGGAATTGGTTTTTTTGAGTATCTCCTGgtgagtattcttttacaac-tataattaaatttgtc------ctgctga-ataaatataatatgatttaatatttcttgagcag-------------
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GAGGGAAACTATTGGTCCCTGGGAACAGAGACCTGGGCACTTTGGAGATGTTTGGAATTATTGGACCGATGATGGCCTAGGATATTACGAGTTTCTCCAGgtgtatgttagttaatgccatctgagtgtttttttttcatctcttctgctatcaacata-tctaacgaaatatttctaccgaaattttcatggaaag
upper sequence: GLYMA19G30460.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G077299_T01 (Zea mays), 5'ss of exon 8
GAAAGATACTATTGGACCATGGGAGGAGAGACCTGGGCACCTTGGTGATGTTTGGAACTATTGGAGTGATGATGGAATTGGTTTTTTTGAGTATCTCCTGgtg--agt--------attcttttacaactataattaaat-ttgtcctgctgaataaatataatatgatttaatatttcttgagcag
|| ||| ||||||| |||||||| ||||||||||| ||| | || ||||||||| | || |||| ||||||||| |||| | | ||| | ||| | |||| ||| |||| || | || | || | ||| | || | | | | ||| | | | || | ||
GAGAGAATCTATTGGTCCATGGGAAGAGAGACCTGGACACTTCGGGGATGTTTGGCATTACTGGACTGATGATGGCCTTGGATACTATGAATTTCTTCAGgtgccagtttatactgcttctgttcgagctttccttccctgttggtgtcctcactgacaacaattaactctgaaatctacatcaaag
upper sequence: GLYMA19G30460.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G10740.1 (Arabidopsis thaliana), 5'ss of exon 8
GAAAGATACTATTGGACCATGGGAGGAGAGACCTGGGCACCTTGGTGATGTTTGGAACTATTGGAGTGATGATGGAATTGGTTTTTTTGAGTATCTCCTGgtgagtattcttttacaactataattaaat--ttgtcctgctgaataaatat--aatatgatttaatatttcttgagcag
|||||| || | ||||| ||||| |||||||| || || |||||||||||||||| ||||||| |||||||| |||| ||||||| | | ||||| ||||| | | | || || | ||| | ||| ||||| | | | |||||| |||
GAAAGAAACCGTAGGACCTTGGGAAGAGAGACCGGGCCATTTTGGTGATGTTTGGAAGTATTGGACCGATGATGGCCTTGGCCACTTTGAGTTCTTTCAAgtgagacttcttcttttctattgagtacataatgatccccgaagctcgttattgaatattaaatgaacattcttg--cag
upper sequence: GLYMA19G30460.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0040g00320.t01 (Vitis vinifera), 5'ss of exon 9
GAAAGATACTATTGGACCATGGGAGGAGAGACCTGGGCACCTTGGTGATGTTTGGAACTATTGGAGTGATGATGGAATTGGTTTTTTTGAGTATCTCCTGgtgagtattctt----ttacaactataattaaatttgtcctg--ctgaataaatataatatg---atttaatatttcttgagcag------------------------
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GAAACAGACAATTGGGCCCTGGGAGGAGAGACCTGGACACTTTGGTGATGTTTGGAAGTACTGGACTGATGATGGACTTGGTTATTTTGAGTTCCTTCAAgtatgtatcttccacctgtcaattgtgaaagattttatttatatcttagtgattgtacaatttccatgagatgctgcttaggtaatttacaaatgttttgtttctgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193387375|gb|FK349600.1|FK349600EST: GAGTATCTCCTG CTAGCAGAGGACCTTGGGACATTGCCGATATGGGTGTTTAACGCTG
genomic: GAGTATCTCCTGgtgagtattc ... tcttgagcagCTAGCAGAGGACCTTGGGGCATTGCCGATATGGGTGTTTAACGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAGATACTATTGGACCATGGGAGGAGAGACCTGGGCACCTTGGTGATGTTTGGAACTATTGGAGTGATGATGGAATTGGTTTTTTTGAGTATCTCCTGgtgagtattcttttacaactataattaaatttgtcctgctgaataaatataatatgatttaatatttcttgagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA