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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGCTTGATGGTCTTGCTTCTAACTATCCAGATCGATTCAAAATATACTATGTGTTAAATCAGgttagtttccatggcacgtggaactataattttcttgtctattacatttgttgcttgggctttgtttgctgaggggtcgtgcaaaatcttggtcttgatg...

Basic information

species Glycine max
transcript GLYMA19G29720.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g40990.1 (Oryza sativa), 5'ss of exon 7
GAAGAGCTTGATGGTCTTGCTTCTAACTATCCAGATCGATTCAAAATATACTATGTGTTAAATCAGgttagtttcca----tggcacgtggaactata-attttcttgtctattacatttgttgcttgggctttgtttgctgaggggtc---gtgcaaaatcttggtcttgatg----------------------------------------------------------------------
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GAAGAATTGGATAGTATGGTTGAAACCTATCCCGATCGCTTCAAGATATACTATGTATTAAATCAGgtttgttttctgttctgaggtctagtactttgtactgtggtgtgcaata-atttcatgcctgaactgtctactttggtagtcccatcttctactacttactgctaatactactatattatggcttgcattaaattcctaccatgcaccttacaccatcagctttgttttcatgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51336831|gb|CO980697.1|CO980697
EST:     TTGCTTCTAACTATCCAGATCGATTCAAAATATACTATGTGTTAAATCAG                         CCTCCTGAGGTATGGGATGGTGGTGAAGGATTTGTGTCAAAGGAGATGATT
genomic: TTGCTTCTAACTATCCAGATCGATTCAAAATATACTATGTGTTAAATCAGgttagtttcc ... atctctccagCCTCCTGAGGTATGGGATGGTGGTGAAGGATTTGTGTCAAAGGAGATGATT