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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCTTAATATGAATAGTACCCTCCTTAATATGCCTTCTCTAGTTGGGGGAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGgtacttcttgtatatcaaatttgtcttctctttgcttattggttctttattggaagattcattatggtctaacaaaattgagttgtctagcctaaacatg...

Basic information

species Glycine max
transcript GLYMA19G28580.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G28580.2 (Glycine max), 5'ss of exon 7
lower sequence: AT5G18230.1 (Arabidopsis thaliana), 5'ss of exon 10
CCTCCTTAATATGAATAGTACCCTCCTTAATATGCCTTCTCTAGTTGGGGGAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGgta-cttcttgtatatcaaatttgtcttctctttgcttattggttctttattggaagattcattatggtctaacaaaattgagttgtctagcctaaacatg--
  | |   |     || ||| |||| |    || |||||| ||  ||| |||||| | |||||||||||| | || ||||||||||| ||||| ||||||||| | | ||  ||||  |||            |||||| | ||  |       || ||||   ||  | | |  | |||   || ||||  ||     |   
AGTACAGCAAGGCCATGGTAACCTCTTAGGCATACCTTCTTTATCTGGAGGAAACGAGAAGCAGTTTTCTTCACAACAGCAAAATCCTCTTTTACAGCAGgtagcatattcaatatggaat-----aatcacatgcttaatagtatt----caaaacattc--catcatattaagagattatcttttctaatctgtttctcag

upper sequence: GLYMA19G28580.2 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 10
CCTCCTTAATATGAATAGTACCCTCCTTAATATGCCTTCTCTAGTTGGGGGAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGgtact-tcttgtatatcaaatttgtc---ttctctttgcttattggttctttattggaagattcatta--tggtctaacaaaattgagttgtctagcctaaacatg
 |  |   | |   | |||||| | |||  ||||||  ||||   ||| ||||| ||||||||||| ||||| || |||||||| || || ||||||||||| || | |  | | |  ||||   |   || | |||  ||  ||   || | ||| |  ||  |||   | || ||      ||  | |  | ||          
GCAGCAACAAACTCAGAGTACCATTCTTGGTATGCCCCCTCTTTCTGGAGGAAATCATAAGCAGTTCTCTGCACAACAGCAAAACCCACTCTTGCAGCAGgtgctatttcttgttttgaattatccaatttttattttttttatgagactgttttgaattatctatttatttgtttattttgcttatgcttccaagttgg------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7796516|gb|AW781913.1|AW781913
EST:     GAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAG                         TCTGGTATTGGACTTGGGGTCCAGTCCACAAGTCTCGTTGGTATTTCTTCT
genomic: GAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGgtacttcttg ... ttcttctcagTCTGGTATTGGACTTGGGGTCCAGTCCACAAGTCTCGTTGGTATTTCTTCT
EST: gi|308098428|gb|HO760169.1|HO760169
EST:     GAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAG                         TCTGGTATTGGACTTGGGGTCCAGTCCACAAGTCTCGTTGGTATTTCTTCT
genomic: GAAACCATAAGCAGTTTTCTGCCCAGCAGCAAAATCCCCTTTTGCAGCAGgtacttcttg ... ttcttctcagTCTGGTATTGGACTTGGGGTCCAGTCCACAAGTCTCGTTGGTATTTCTTCT