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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTGTATGAGGATAATGAATATGCTCTTTATACTGTAACACTCTTCAGTCGTGTTGCGGATAATTTTAGAACTAGTGCACGCGAAAAAGGATTCCAAgtaagtatttatgtatatttctatttgttaatattggtaatataggtattctgtgattttaatcctgccactttttaatgaaaagttgtgggatgaaggaatgcatgagacacctaatggcaagtgttagttagtatcaatgcatgagttgatgaaaggtgtttaattgaactttatgtcattttattcag

Basic information

species Glycine max
transcript GLYMA19G27360.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300408|gb|FG988825.1|FG988825
EST:     GTCGTGTTGCGGATAATTTTAGAACTAGTGCACGCGAAAAAGGATTCCAA                         ATTCGTGACTTTGAATACAGTCCAGAAACACATGAGAACCGAAAGCAGGAA
genomic: GTCGTGTTGCGGATAATTTTAGAACTAGTGCACGCGAAAAAGGATTCCAAgtaagtattt ... ttttattcagATTCGTGACTTTGAATACAGTCCAGAAACACATGAGAACCGAAAGCAGGAA
EST: gi|58018243|gb|CX704985.1|CX704985
EST:     GCGGATAATTTTAGAACTAGTGCACGCGAAAAAGGATTCCAA                         ATTCGTGACTTTGAATACAGTCCAGAAACACATGAGAACCGAAAGCAGGAA
genomic: GCGGATAATTTTAGAACTAGTGCACGCGAAAAAGGATTCCAAgtaagtattt ... ttttattcagATTCGTGACTTTGAATACAGTCCAGAAACACATGAGAACCGAAAGCAGGAA
EST: gi|6502104|gb|AW203477.1|AW203477
EST:     GTCGTGTTGCGGATAATTTTAGAACTAGTGCACGCGAAAAAGGATTCCAA                         ATTCGTGACTTTGAATACAGTCCAGAAACACATGAGAACCGAAAGCAGGAA
genomic: GTCGTGTTGCGGATAATTTTAGAACTAGTGCACGCGAAAAAGGATTCCAAgtaagtattt ... ttttattcagATTCGTGACTTTGAATACAGTCCAGAAACACATGAGAACCGAAAGCAGGAA