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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATCTCGCACTAAATATACTGTTGTCTCCAGAGCTCATCGGCACGTTGGAACTACCTATGCTCAATTAATCGCTGCATTGGCTGCAACACGCAATCTGGgtacatgcatttccctcaccccctgtattatttgttattacttatttcttcaaacataccactgaag

Basic information

species Glycine max
transcript GLYMA19G26840.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G26840.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0068g01550.t01 (Vitis vinifera), 5'ss of exon 6
GCATCTCGCACTAAATATACTGTTGTCTCCAGAGCTCATCGGCACGTTGGAACTACCTATGCTCAATTAATCGCTGCATTGGCTGCAACACGCAATCTGGgtacatgcatttccctcaccccctgtattatttgttattacttatttcttcaaacataccactgaag-------
||||| ||  | ||  || ||||||| ||  | |||||  |||  || ||||||||||||||||| ||| |||||||||| |||||| ||  ||| || ||||| | |  |    ||  |  ||  ||   || || | |   | || || ||   | | | |           
GCATCACGTGCAAAGCATGCTGTTGTTTCTGGGGCTCACAGGCGTGTGGGAACTACCTATGCTCAGTTAGTCGCTGCATTAGCTGCAGCAAACAAACTCGgtactt-ctctagtttctgcttctagatccctttttgtgatgaagttttttaattttcctatttcttttttcag