1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATGGGGAAGGATGTTGTGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGgtccgtttcctttgctatcatgtttccacctaatcaataaaaatattctgttttctaactacactttttatgcatatgcag
species | Glycine max |
transcript | GLYMA19G24620.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCCEST: gi|208300265|gb|GE098924.1|GE098924
genomic: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGgtccgtttcc ... gcatatgcagATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCC
EST: TGTCATTCTTAACTTGGGCCGCCGAACCCGAGATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTACTGTCATTGGCACTACTTCAEST: gi|192304183|gb|FG996379.1|FG996379
genomic: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGgtccgtttcc ... gcatatgcagATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCA
EST: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCCEST: gi|193577061|gb|FK535668.1|FK535668
genomic: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGgtccgtttcc ... gcatatgcagATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCC
EST: AAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTACTGTCAEST: gi|105633944|gb|DW247307.1|DW247307
genomic: AAGAGAGAAAACTGgtccgtttcc ... gcatatgcagATGGGATTTAAATGGATATTTGTACTGTCA
EST: TGTCATTCTTAACTTGGGCCGCCGAACCCGAGATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTEST: gi|151405823|gb|EV275638.1|EV275638
genomic: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGgtccgtttcc ... gcatatgcagATGGGATTTAAATGGATATTTGT
EST: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCCEST: gi|13240163|gb|BG359472.1|BG359472
genomic: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGgtccgtttcc ... gcatatgcagATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCC
EST: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCACGCTGCCEST: gi|254330991|gb|GR842256.1|GR842256
genomic: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGgtccgtttcc ... gcatatgcagATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCC
EST: TGTCATTCTTAACTTGGGCCGCCGAACCCGAGATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTACTGTCATTGGCACTACTTCAG-CTGCCEST: gi|193527999|gb|FK483501.1|FK483501
genomic: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGgtccgtttcc ... gcatatgcagATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCC
EST: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTG ATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCC
genomic: TGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGgtccgtttcc ... gcatatgcagATGGGATTTAAATGGATATTTGTACTGTCACTGGCACTACTTCAGGCTGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGGAAGGATGTTGTGTCATTCTTAAGTTGGGCCGCCGAACCTGAGATGGAAGAGAGAAAACTGgtccgtttcctttgctatcatgtttccacctaatcaataaaaatattctgttttctaactacactttttatgcatatgcag
- - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA