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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAGgtgagaatttttaattgtcaaagttaaaactttgggttaagagttacttaaacttcatttatttaaatgaagtaagggaaggcactgttggttgagcttt...

Basic information

species Glycine max
transcript GLYMA19G24250.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g40874.1 (Oryza sativa), 5'ss of exon 7
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAGgtgag------aatttttaattgtcaaagttaa--aactt-tgggttaagagttacttaaacttcatttatttaaatgaagtaagggaaggcactgttggttgagcttt
 | || ||||| ||||| || || || |||||||| ||||||||||| ||||| ||||| ||| ||||||| ||      |||  ||  |  | |    ||   ||||| | ||||| || | |   |  |    |||  | || || ||| |    | |||   |  || ||     
CTTGTGCTTCGTTTTGCCAACCGCTTGTTCTTGCCTCTTTGGAACCGTGACAATATTGATAATATACAGgtaagctggtcaatagttggtacttagcagtaggcaacttataggttatgattcaagaagtccaacttttataaactgcagtta----atgcatcat--gtagaag---

upper sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G130230_T03 (Zea mays), 5'ss of exon 7
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAGgtgagaatttttaattgtcaaagttaaaactttggg-ttaagagttacttaaacttcatttatttaaatgaagtaagggaaggcactgttggttgagcttt-
 | || ||||| ||||| || || || |||||||| ||||||||||||||||| ||||| ||| ||||||| |||  ||||   | |   || ||  | || ||   |     || ||   |     | |||  | || || |   |     |  | |   |  ||  |  
CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatcttttgtatttggtagctagcagttgggaacttcattttgctggtataagctctatgcacataaattgcagtcc--ctttatcattcaagaatgt

upper sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G27300.1 (Arabidopsis thaliana), 5'ss of exon 7
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAGgtgagaatttttaattgtcaaagttaaaactttgggttaagagttacttaaacttca-tttatttaaatgaagtaagggaaggcactgttggttgagcttt
||||| ||||| ||||| ||||| || || |||||||| |||||||||||||| ||||  || |||||||||||| |||   || |   |    |||  |||   | ||   ||   || | || | |  ||  | || ||        |    || || |  |      
TTGGTTCTTCGGTTTGCCAATCGCTTGTTTTTGCCACTATGGAACCGCGACAATATTGCAAACGTACAGgtgagagttt--gatcgcttagcacaaatatttc--taaacttttgtatagagttgaatccatccacataaatctc---taatttctttttgcag------

upper sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G40760.1 (Arabidopsis thaliana), 5'ss of exon 7
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAGgtgagaatttttaattgtcaaagttaaaact-ttgggttaagagttacttaaacttcattta----tttaaatgaagtaagggaaggcactgttggttgagcttt
||||| || || ||||||||||| ||||||||||||||||||||||| ||||| || || || || |||||||||  |    || |  ||     |||   |  |  |    |||| ||| | |  ||| |    || |||||   |    | ||                   
TTGGTCCTCCGGTTTGCAAATCGCTTTTTCTTGCCACTTTGGAACCGTGACAATATCGAGAACGTGCAGgtgagagctgc--atagctaagacagaaatagtcagactgtttgttatttagagtcaattcacattttcaaatgcttttcttgcag-------------------

upper sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 5'ss of exon 7
TTGGTACTTCGCTTTGCAAATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAGgtgagaatttttaatt----gtcaaagttaaaactttgggttaagagtta---cttaaacttcatttatttaaatgaagtaagggaaggcactgttggttgagcttt
||||||||||| |||||||||||  | || ||||| || |||||||| ||||||||||| ||||||||||| ||| |  ||| ||    |   |  |   ||  ||   |  || || |   | | ||  | | ||||| |    |||     |  || |   |    |       
TTGGTACTTCGTTTTGCAAATCGCATGTTTTTGCCCCTCTGGAACCGTGACAACATTGATAATGTACAGgttagattccttattttggtgattacctctgaaacttatttacagggtgagaccatgaaagtaaattattaactataagatttaggtggtatcctcaagt-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040428|gb|BM308722.1|BM308722
EST:     ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAG                         ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAGgtgagaattt ... tctctgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: gi|254338293|gb|GR849818.1|GR849818
EST:     ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAG                         ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAGgtgagaattt ... tctctgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
EST: gi|16279238|gb|BI943331.1|BI943331
EST:     ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAACGTACAG                         ATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC
genomic: ATCGGTTTTTCTTGCCACTTTGGAACCGCGACAACATTGACAATGTACAGgtgagaattt ... tctctgacagATAGTTTTCAGAGAGGATTTTGGAACTGATGGCCGTGGTGGATATTTTGAC