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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAACCCATGGCTTCATGATCGGTAGTACAGCCATGAAAAATGTGTGGTTGTCAATGGAACATCAGGCTATTTTATGGTGTAATCAATTGGTTGTCCAAgtaagtaagtttattttttgtcaagaacatatacttggttcttctttatgtggtccttatcatttatattcttatctag

Basic information

species Glycine max
transcript GLYMA19G24220.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G24220.3 (Glycine max), 5'ss of exon 7
lower sequence: AT3G27325.1 (Arabidopsis thaliana), 5'ss of exon 6
CCCAACCCATGGCTTCATGATCGGTAGTACAGCCATGAAAAATGTGTGGTTGTCAATGGAACATCAGGCTATTTTATGGTGTAATCAATTGGTTGTCCAAgtaagtaagtttattttttgtcaagaacatatacttggttcttctttatgtggtccttatcatttatattcttatctag
  |||  || ||||| |||||  ||||||||  ||||| ||| |||||| |||||||||||||||| |||||||| |||||||| ||||||||||| |||||| ||||  |  |   || |    ||  |  |  ||   | | || |   |    | |  |||| ||| |  ||  ||
TTCAAGTCACGGCTTTATGATAAGTAGTACAAGCATGACAAACGTGTGGCTGTCAATGGAACATCAAGCTATTTTGTGGTGTAACCAATTGGTTGTTCAAgtaggtaaaat--tcccttatttgtaatctggaaatg--ccatgttca-acgaatttgaaaatttgtatgcc-atgcag

upper sequence: GLYMA19G24220.3 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0047g01140.t01 (Vitis vinifera), 5'ss of exon 2
------CCCAACCCATGGCTTCATGATCGGTAGTACAGCCATGAAAAATGTGTGGTTGTCAATGGAACATCAGGCTATTTTATGGTGTAATCAATTGGTTGTCCAAgtaagtaagtttattttttgtcaagaacatatacttggttcttctttatgtggtccttatcatttatattcttatctag------
      ||| ||||| || || |  ||| |||| || | |||||||||||| ||| |||| |||||||| |||| ||||||||||||||||||| | ||||| || |  || ||  ||  | ||| | ||   ||| |  ||   |  | |||     || || |   |||||  | ||||          
TGTGCCCCCCACCCACGGATTTACCATCAGTAGCACTGGCATGAAAAATGTTTGGCTGTCCATGGAACACCAGGTTATTTTATGGTGTAATCAACTAGTTgtacaggcgagcaaaatttctctttctaaaagtcatttgatt--ctggtatttggactgttctaaaattttatggtgttattgtttttcag