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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTGgtatgggtcattcttttactgtatgaaaatacaattgatttctttctgcaagaaattttactcgttacattgttattctaattcaatagtttttctactaatacaacattgttattgacggaataaacaattaattgtag

Basic information

species Glycine max
transcript GLYMA19G23610.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G23610.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0219g00120.t01 (Vitis vinifera), 5'ss of exon 7
ATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTGgtatgggtcattcttttactg--tatgaaaatacaattgatttctttctgcaagaaattttactcgttacattgttattctaattcaatagtttttctactaatacaacattgttattgacggaataaacaattaattgtag
|||| |||||||||||||||||||| |||||||| || ||||||||  ||||||||    ||| ||  ||   | | |   ||  ||  ||| || |       || |  ||||| ||   | |||     |||   ||  ||||| | |    |                                     
ATTCTTGGGTGAACTTCTATGGAAATATAGGAAAGCTCTTGCTATCTTTGgtatggaattttcattgccttacttttattttattatctattcctcttacttttaagtgctactcattgattggttg----aatgttatc-tttttatgcggcca-------------------------------------

upper sequence: GLYMA19G23610.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0219g00130.t01 (Vitis vinifera), 5'ss of exon 7
ATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTGgtatgggtcattcttttactgtatgaaaatacaattgatttctttctgcaagaaattttactcgttacattgttattctaattcaatagtttttctactaatacaacattgttattgacggaataaacaattaattgtag
 ||| ||||||||||||||||||||||||||||| || ||| |||| |||||| ||    |||    | || |||             |   | | | |    | |  ||||| |||   | ||        |  ||| |   |   ||     |    |  |    | | ||    ||   ||||| ||
GTTCTTGGGTGAACTTCTATGGAAACATAGGAAAGCTCTTGATATCTCTGgtacggaatgttc----attgcatg----------ccttccttctttactgtgactgctactcattaatctctttcataggatatatattgacttagctctggaatttcttgtgaaaatgtaaatggcatacaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718453|gb|BW666251.1|BW666251
EST:     ATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTG                         GTGTCTCTATTCTTTGACATCCTCTTCATGTGCCAACATTATCTGTTATAC
genomic: ATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTGgtatgggtca ... ttaattgtagGTGTCTCTATTCTTTGACATCCTCTTCATGTGCCAACATTATCTGTTATAC
EST: gi|192331772|gb|FK024876.1|FK024876
EST:     ATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTG                         GTGTCTCTATTCTTTGACATCCTCTTCATGTGCCAACATTATCTGTTATAC
genomic: ATTCATGGGTGAACTTCTATGGAAACATAGGAAAACTATTGCTATCCCTGgtatgggtca ... ttaattgtagGTGTCTCTATTCTTTGACATCCTCTTCATGTGCCAACATTATCTGTTATAC