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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAGgtgagaaagtgtgctgccaaagttactactgaagtcatcaaacaaggccttattagttggcttgacaaattcatatttcataatttgcctcatctaactg...

Basic information

species Glycine max
transcript GLYMA19G22690.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G22690.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g40874.1 (Oryza sativa), 5'ss of exon 7
TTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAGgtgagaaagtgtgctgccaaagttactactgaagtcatcaaacaaggccttatt-agttggcttgacaaattcatatttcataatttgcctcatctaactg
 | || ||||||||||| ||||| || ||| ||||||| |||||||||||||| |||| |||| | ||||| ||   ||     |       |    | | || || |  | | |   | ||| |    |    ||   |  | | | ||     ||| |||| ||   |
CTTGTGCTTCGTTTTGCCAACCGCTTGTTCTTGCCTCTTTGGAACCGTGACAATATTGATAATATACAGgtaagctggtcaatagttggtact-tagcagtaggcaacttataggttatgattcaagaagtccaacttttataaactgcagttaatgcatcatgtagaag

upper sequence: GLYMA19G22690.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g38840.1 (Oryza sativa), 5'ss of exon 7
TTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAGgtgagaaagtgtgctgccaaagttactac---tgaagtcatcaaacaaggccttattagttggcttgacaaattcatatttcataatttgcctcatctaactg---------------------------------------------------------------------------
 | || ||||| ||||||||||| || ||| | ||||| ||||| ||||| |||||||||||||| ||||| | |   | | ||    |      |     |  | |  ||||     |    ||   | | | |      ||  |  |  | || |||  |    ||  |                                                                            
CTTGTGCTTCGCTTTGCAAACCGTTTGTTCCTACCTCTTTGGAATCGTGATAACATTGCTAATGTACAGgtaatatgcttttctatgtagtcctttgtatttttatttgtcaactgtagttacatctat-gacatcctctgttattggtata-aagttgaatggattagttttggaaattctggaaagttttatcattatcatggtgcgaacaacatgtgcttgaacataataaatatatgctgcag

upper sequence: GLYMA19G22690.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G130230_T03 (Zea mays), 5'ss of exon 7
TTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAGgtgagaaagtgtgctgccaaagttactactgaagtcatcaaacaaggccttattagt--tggcttgacaaattcatatttcataatttgcctcatctaactg---
 | || ||||||||||| |||||||||||| ||||||| |||||||| ||||| |||| |||| | ||||| |||   | ||        ||  |||  | |||     |||      ||  | ||    |||  |   |   | ||| ||     |   ||||  ||      
CTTGTTCTTCGTTTTGCCAACCGATTATTCTTGCCTCTTTGGAACCGCGACAATATTGATAATATACAGgtaagatcttttgtatttg--gtagcta--gcagttgg-gaacttcattttgctggtataagctctatgcacataaattgcagtccctttatcattcaagaatgt

upper sequence: GLYMA19G22690.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G031107_T01 (Zea mays), 5'ss of exon 7
TTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAGgtgagaaagtgtgctgccaaagttac--tactgaagtcatcaaacaaggccttattagttggct-tgacaaattcatatttcataatttgcctcatctaactg----------------------------------------------------------------------------------------------
 | || ||||||||||||||||| |||||  ||||||| ||||||||||| ||||| ||||| || ||||| |||   | | ||      |||||  || |    | ||      |    | ||  ||||||| | | || || |||   |||  |||| |   | |  |||                                                                                              
CTTGTGCTTCGTTTTGCAAACCGCTTATTTTTGCCTCTCTGGAACCGTGATAACATAGCTAACGTACAGgtaagatcctttcctag-gtggttacagtattttttttatttctttataaatcat-ggttggctgttataagttgataacacatcttttgtca-gtttgtctgaagaattaaataaaattgatgtcaaaaagctgtattttttcagtaattattgtgcctaacatatgttcttgcatgtaatgaatgaattctgcag

upper sequence: GLYMA19G22690.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0171g00490.t01 (Vitis vinifera), 5'ss of exon 7
TTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAGgtgagaaagtgtgctgccaaagttactactgaagtcatcaaacaaggccttattagttggcttgacaaat--tcatatttcataatttgcctcatctaactg
|| ||||||||||||||||| ||  | ||  |||| || ||||||||||||||||||| |||||| ||||| |||     |  |       ||||  |||||        ||| ||    |  |      |  |  | |    |||     ||  | |  || || |    
TTGGTACTTCGTTTTGCAAATCGCATGTTTTTGCCCCTCTGGAACCGTGACAACATTGATAATGTACAGgttagattccttattttggtgattacctctgaaacttatttacagggtgagaccatgaaagtaaattattaactataagatttaggtggtatcctcaagt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213607196|gb|DB965110.1|DB965110
EST:     ACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAG                         ATCGTTTTCAGAGAAAATTTTGGAACTGAAGGTCGAGGTGGATATTTTGAC
genomic: ACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAGgtgagaaagt ... actttggcagATCGTTTTCAGAGAAAATTTTGGAACTGAAGGTCGAGGTGGATATTTTGAC
EST: gi|192301055|gb|FG990125.1|FG990125
EST:     ACCGATTATTCATGCCTCTATGGAACCGTGACA-CATTGCTAATGTGCAG                         ATCGTTTTCAGAGAAA
genomic: ACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAGgtgagaaagt ... actttggcagATCGTTTTCAGAGAAA
EST: gi|209700934|gb|BW661313.1|BW661313
EST:     ACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAG                         ATCGTTTTCAGAGAAAATTTTGGAACTGAAGGTCGAGGTGGATATTTTGAC
genomic: ACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAGgtgagaaagt ... actttggcagATCGTTTTCAGAGAAAATTTTGGAACTGAAGGTCGAGGTGGATATTTTGAC