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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAAgtaaggttaaaagattttatgatcagaaggtttccaaaagagggaaaaaaaaaatttctttttgtgtctttgatttggttttctatatatgtgtag

Basic information

species Glycine max
transcript GLYMA19G07410.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209722143|gb|BW659334.1|BW659334
EST:     GATGGCCTGGAGATGGGAAATAATACAAAA                         GCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTG
genomic: GATGGCCTGGAGATGGGAAATAATACAAAAgtaaggttaa ... atatgtgtagGCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTG
EST: gi|7146181|gb|AW508166.1|AW508166
EST:     GTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAA                         GCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTG
genomic: GTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAAgtaaggttaa ... atatgtgtagGCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTG
EST: gi|193651239|gb|FK599436.1|FK599436
EST:     AGCGGCAGGTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAA                         GCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTG
genomic: AGCGGCAGGTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAAgtaaggttaa ... atatgtgtagGCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTG
EST: gi|42722611|gb|CK768510.1|CK768510
EST:     GTTTTGTGGATGGCCTGGAGATGGGAAAAAATACAAAA                         GCTGCAATCATGAGACTTGGGCTTAGAGAAATGAAGGCATTTTCAAAAGT-
genomic: GTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAAgtaaggttaa ... atatgtgtagGCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAA-GTT
EST: gi|9983263|gb|BE657371.1|BE657371
EST:     GTTTTGTGGATGGCNTNNNGATGGGAAATAATANANAA                         GCTGCAATCATGAGACTTNGNNNTAGANNAATGAAGGCATTTTCAAAGTTG
genomic: GTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAAgtaaggttaa ... atatgtgtagGCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTG
EST: gi|193641759|gb|FK590625.1|FK590625
EST:     CGGCGGGTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAA                         GCTGCAATCATGAGACTTAGTCTTAGAGAAATGAAGGCATTTTCAAAGTTG
genomic: CGGCAGGTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAAgtaaggttaa ... atatgtgtagGCTGCAATCATGAGACTTGGTCTTAGAGAAATGAAGGCATTTTCAAAGTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTTGTGGATGGCCTGGAGATGGGAAATAATACAAAAgtaaggttaaaagattttatgatcagaaggtttccaaaagagggaaaaaaaaaatttctttttgtgtctttgatttggttttctatatatgtgtag

- - - - - - -  TGGAGA
- - - - - - - - GGAGAT
- - - - - - - -  GAGATG