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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTATATTCCAAAAGTGAAAGCTGCAATTGAGTCAATATTAAGGTCTTGTCATAAAACGTATAGTCAAGCACTTTTGACATCATCACGGACCACAATAGgtaattgcttctattatatgctagctggattgaaggtgtttaagtataagcatgacagtgaaaaggctgaatcaaacctcaaattgaattgtggaaagca...

Basic information

species Glycine max
transcript GLYMA19G04970.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G04970.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G344967_T01 (Zea mays), 5'ss of exon 10
CACTATATTCCAAAAGTGAAAGCTGCAATTGAGTCAATATTAAGGTCTTGTCATAAAACGTATAGTCAAGCACTTTTGACATCATCACGGACCACAATAGgtaattgcttctattatatgctagctgg------attgaaggtgtttaa---gtataagcatgacagtgaaaaggctgaatcaaacctcaaattgaattgtggaaagca------------------------------------------------------------------------------------
||||||||||| || |||||  | ||||||||||||||| ||||||||||  | ||  | ||||| |  |||||| | |||||||||  ||| ||||||||||      | |||   ||  ||  | |      |||| |  ||||| |    |       | || ||| |     || |  |  |   | |      |||   ||  |                                                                                    
CACTATATTCCTAAGGTGAAGTCAGCAATTGAGTCAATACTAAGGTCTTGCAACAAGGCATATAGCCTGGCACTTCTCACATCATCAAAGACTACAATAGgtatgcttctatatctcattatatttagcaaaaaattggaattgtttgaccaatgctgttgttactgtgtattatttggacaatgctctagaaactgctgtattaattatgaaaagacaggaccagtttgtaatatcctaatatagttcacctttttcccatttactctgatttctaatactaatattttcag

upper sequence: GLYMA19G04970.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0083g00750.t01 (Vitis vinifera), 5'ss of exon 11
CACTATATTCCAAAAGTGAAAGCTGCAATTGAGTCAATATTAAGGTCTTGTCATAAAACGTATAGTCAAGCACTTTTGACATCATCACGGACCACAATAGgtaattgctt--ctattatatgctagctggattgaaggtgtttaagtataagcatgacagtgaaaaggctgaatcaaacctcaaattgaattgtggaaagca
||||| |||||||||||||| ||||||||||| || ||  |||| ||||| |||| ||| |||||||| || ||| | || || ||||||||||| ||||||||||  ||  || ||| ||  |  || | |  ||      | |  ||     || |  | ||   ||  |   |||  | | |   | |     |||   
CACTACATTCCAAAAGTGAAGGCTGCAATTGATTCGATTATAAGATCTTGCCATAGAACCTATAGTCAGGCTCTTCTTACTTCGTCACGGACCACTATAGgtaatttttttgcttttacatcatccctaggtccaataaaggtgatgattt-tgtgtcttttaatctgcccatataaagttaagaaaaagtataacaaaat-