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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGGAAGCTGGTGAGCAAAGTATGCCATATGGAACCCAAAATGCTCACTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagccactttcttgcatttttgtgctgaatgtggtgatttaatttgaattgtattttaatgattgtcccttggtgcag

Basic information

species Glycine max
transcript GLYMA19G04320.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G04320.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0083g01050.t01 (Vitis vinifera), 5'ss of exon 7
CATGGGAAGCTGGTGAGCAAAGTATGCCATATGGAACCCAAAATGCTCACTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagccactttcttgcatttttgtgctgaatgtggtgatttaatttgaattgtattttaatgattgtcccttggtgcag-----
||||||||  ||||||||| ||||||||||| ||   |||  | ||||| ||||| || |||||||||||||| || ||||| ||||||||||| |||||||||  |    ||||  |   ||   | | ||   | |  |      ||| | |   ||  | ||| | | | | ||  ||        
CATGGGAAAGTGGTGAGCAGAGTATGCCATACGGCCACCAGCAAGCTCAGTCTCAGGGGTTCTTCCAGCCTTTAGAATGCAATCCCACATTGCAAATAGGgtaaacatttaacttggtgaaatccatcttctctttttaat------attagtaccatagctgaattagttttcttttatgggatgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192308196|gb|FK002736.1|FK002736
EST:     TCTCAAGGCTTTTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTTTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|8402165|gb|BE057799.1|BE057799
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGAACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|193552261|gb|FK509410.1|FK509410
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCATCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|207776290|gb|GD749611.1|GD749611
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCT
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCT
EST: gi|8285406|gb|BE022965.1|BE022965
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|207819216|gb|GD789920.1|GD789920
EST:     CCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: CCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|208114010|gb|GD909353.1|GD909353
EST:     AGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: AGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|208324765|gb|GE125773.1|GE125773
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|193455797|gb|FK420530.1|FK420530
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|193494014|gb|FK461870.1|FK461870
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCNCATTGCAGATAGG                         TTCTGACTACAGGTACATACCCTAGAAAGCCTCAGAGCAGCAGCTAGCTGC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACAT-CCCT-GAA-GCCTCAGAGCAGCAGCTAGCTGC
EST: gi|7589900|gb|AW705674.1|AW705674
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|5677144|gb|AI938274.1|AI938274
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|6951856|gb|AW423924.1|AW423924
EST:     CTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: CTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|208271379|gb|GE072585.1|GE072585
EST:     AGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: AGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|207696567|gb|GD678688.1|GD678688
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|208179425|gb|GD974086.1|GD974086
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|208336791|gb|GE136035.1|GE136035
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|193508339|gb|FK466182.1|FK466182
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|193524586|gb|FK483157.1|FK483157
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|208283379|gb|GE083255.1|GE083255
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|208176220|gb|GD974339.1|GD974339
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|208314345|gb|GE110433.1|GE110433
EST:     TTTGGAGTGCAACCCCTACTATTGTCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCA
genomic: TTTGGAGTGCAACCCC-AC-ATTG-CAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCA
EST: gi|193510320|gb|FK470276.1|FK470276
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|193608890|gb|FK563406.1|FK563406
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|18733553|gb|BM527677.1|BM527677
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|207757901|gb|GD729151.1|GD729151
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|208068232|gb|GD866586.1|GD866586
EST:     TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCTGAGCAGCAGCTAGCTGCCAC
genomic: TCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|207796829|gb|GD768891.1|GD768891
EST:     TTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: TTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
EST: gi|9984961|gb|BE659069.1|BE659069
EST:     CTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGG                         TTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC
genomic: CTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagc ... cttggtgcagTTCTGACTACAGGTACATCCCTGAAGCCTCAGAGCAGCAGCTAGCTGCCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATGGGAAGCTGGTGAGCAAAGTATGCCATATGGAACCCAAAATGCTCACTCTCAAGGCTTCTTCCAGCCTTTGGAGTGCAACCCCACATTGCAGATAGGgtaattaagccactttcttgcatttttgtgctgaatgtggtgatttaatttgaattgtattttaatgattgtcccttggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT