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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACTGTTTATAGAATGCACTCACTCCTACCTGATAACCTACAGCTAAGAGACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataataacattttatatagcatcacaatttcccccccatatatattacaatatttcatatgagcaccactcctaaaaaatagttagtttaattcctctgaatgcttaataaaaaaaatctttcttatttggtattgtag

Basic information

species Glycine max
transcript GLYMA19G01470.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254332514|gb|GR846452.1|GR846452
EST:     CCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGA                         AATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
genomic: CCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataat ... ggtattgtagAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
EST: gi|21889698|gb|BQ742911.1|BQ742911
EST:     GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGA                         AATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
genomic: GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataat ... ggtattgtagAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
EST: gi|21889807|gb|BQ743020.1|BQ743020
EST:     GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGA                         AATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
genomic: GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataat ... ggtattgtagAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
EST: gi|15663097|gb|BI700468.1|BI700468
EST:     GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGA                         AATTCCTATGAAGAATTTGATTGGACTGCAAGGAGNNNNNNNCATTATCTG
genomic: GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataat ... ggtattgtagAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAA-CATTATCTG
EST: gi|17519786|gb|BM188828.1|BM188828
EST:     GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGA                         AATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
genomic: GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataat ... ggtattgtagAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
EST: gi|17401371|gb|BM178153.1|BM178153
EST:     GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGA                         AATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
genomic: GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataat ... ggtattgtagAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
EST: gi|37995905|gb|CF807494.1|CF807494
EST:     GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGA                         AATTCCTATGAAGAATTTGATTGGACTGCAAGGAGNNNNNNNCATTATCTG
genomic: GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataat ... ggtattgtagAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAA-CATTATCTG
EST: gi|254336835|gb|GR843014.1|GR843014
EST:     GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGA                         AATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAA-CATTATCTGA
genomic: GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataat ... ggtattgtagAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
EST: gi|21889538|gb|BQ742751.1|BQ742751
EST:     GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGA                         AATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
genomic: GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataat ... ggtattgtagAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
EST: gi|37997030|gb|CF808619.1|CF808619
EST:     GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGA                         AATTCCTATGAAGAATTTGATTGGACTGCAAGGNNNNNNNNCATTATCTGA
genomic: GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataat ... ggtattgtagAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
EST: gi|254339407|gb|GR848124.1|GR848124
EST:     GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGA                         AATTCCTATGAAGAAGTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
genomic: GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataat ... ggtattgtagAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
EST: gi|17400413|gb|BM177195.1|BM177195
EST:     GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGA                         AATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA
genomic: GACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataat ... ggtattgtagAATTCCTATGAAGAATTTGATTGGACTGCAAGGAGAAAAAACATTATCTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGACTGTTTATAGAATGCACTCACTCCTACCTGATAACCTACAGCTAAGAGACATATCCGCTACTCCAGGACCCAACAAATCTCCTCCATTAGTCAAAGAgtatgataataacattttatatagcatcacaatttcccccccatatatattacaatatttcatatgagcaccactcctaaaaaatagttagtttaattcctctgaatgcttaataaaaaaaatctttcttatttggtattgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC