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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATATTTGAATTTGCAATCAATGGCTCGGATGAAGAAAAGATATCTGCTGCTACCATTCTTTGTGGGGCATCTTTAGTACGTGGTTGGAATGTGCAGgtgatcccaacaccattttaatttgattttcttcataattagaaaatcatactagactattttttttttattcattttgtttgcctccccttctttttccattttttgttttttactttcatgattataatgattatcattgtttgcag

Basic information

species Glycine max
transcript GLYMA19G00780.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G00780.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv07s0104g00390.t01 (Vitis vinifera), 5'ss of exon 9
GAAAATATTTGAATTTGCAATCAATGGCTCGGATGAAGAAAAGATATCTGCTGCTACCATTCTTTGTGGGGCATCTTTAGTACGTGGTTGGAATGTGCAGgtga-tcccaac--accattttaatttgattttcttcata----attagaaaatcatactagactatttttttt--ttat-------------------tcattttgtttgcctccc-----cttctttttccattttttgttttttactttcatgattataatgattatcattgtttgcag
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GAAAATCTATGAGATAGCAGTCAATGGTTCAGATGATGAGAAGATATCTGCTGCAGCAATTCTTTGTGGGGCTTCTCTAGTTCGTGGTTGGAATATACAGgtaaatgccaaggaagtgtttttgttgggtttacttaaaagggcattgtgtttttttaatattctcttttgcttgattatcatggaagagcagtatgtctgattatttttgtcttctgaagtcacctctttttctttttgatccatttgttacaagtatattttggtctatgttgcttgcag