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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCTCAAGGCCTACCAAAATTTTCTGTTCCAAAATCTTTTGAGTATGCACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGCTATATTGGtaagatctccttttctcctctttgaatttaaagaaaatagtatattgggatttgggaattatttttccaattaaattaattttcaacctacagg

Basic information

species Glycine max
transcript GLYMA18G52270.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 7
-ATACCTCAAGGCCTACCAAAATTTTCTGTTCCAAAATCTTTTGAGTATGCACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGCTATATTGGtaag------atctccttttctcctctttgaatttaaagaaaatagtatattgggatttgggaattatttttccaattaaattaattttcaacctacagg
 |||||||| ||||| ||||||||||||||||| |||  ||||| ||||||| ||   || ||||| ||||| ||||| || |||||||| ||||||||||||||      || |      |||  |||  ||| |      | | |||  |||   | ||| |||    | ||||   |  ||| ||||    ||  || 
AATACCTCAGGGCCTCCCAAAATTTTCTGTTCCTAAAAGTTTTGGGTATGCAAAGGATTTGATTCCGACTGCACTTCTTATTACTGGTGTAGCTATATTGgtaagggaaatatgtagaccactctacttcaaatctttctcta-ttgtactttgaactatggtaatc---tatccagcaactttattttttggactctag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|105633381|gb|DW246744.1|DW246744
EST:     ACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGCTATATTGG                         AATCAGTGGGAATTGCGAAGGCATTAGCAGCAAAGAATGGGT
genomic: ACAGTCCTTAATTCCAACTGCTCTTCTCATAACTGGTGTGGCTATATTGGtaagatctcc ... aacctacaggAATCAGTGGGAATTGCGAAGGCATTAGCAGCAAAGAATGGGT
EST: gi|105633408|gb|DW246771.1|DW246771
EST:     TCCAACTGCTCTTCTCATAACTGGTGTGGCTATATTGG                         AATCAGTGGGAATTGCGAANGCATTAGCAGCAAAGAATGGGTAC
genomic: TCCAACTGCTCTTCTCATAACTGGTGTGGCTATATTGGtaagatctcc ... aacctacaggAATCAGTGGGAATTGCGAAGGCATTAGCAGCAAAGAATGGGTAC