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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGGCTTGATCTGCATATTTCTGAAATTGAGCAATTGTGCACAGAATTCCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAAtgtaagccatatcttatgtaaaacaatggtcttagaggcccagatatgttcccttatatgaatattgtgttgca

Basic information

species Glycine max
transcript GLYMA18G52130.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G52130.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0146g00120.t01 (Vitis vinifera), 5'ss of exon 7
GGGGCTTGATCTGCATATTTCTGAAATTGAGCAATTGTGCACAGAATTCCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAAtgtaagccatatcttatgtaaaacaatggtcttagaggcccagatatgttcccttatatgaatattgtgttgca--------------------------
 || ||  ||||||||||||||||||||||| || | |||| ||| ||||| ||||| |||||||||||||| || ||||  || ||||||||||||| || |||   | | |   |  | |  || |       | |     || |      |  | || ||  |                                
-GGTCTCAATCTGCATATTTCTGAAATTGAGAAACTCTGCAAAGAGTTCCCTTCAACGGTTGTATTGCTTGACCATTTGGCTTTCTGCAAACCACCAACgtgagctccaccatgcttgga-ctttgttacagtgagtctttcaatatcttgcgaggtaaagatcataaaaagctgctctgacacatttcgttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192300837|gb|FG989734.1|FG989734
EST:     CCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAA                         TAAATGATGAGGAAGGTCTTGTCTTTTCTCAACTTTTAAATCTGTCTAGAT
genomic: CCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAAtgtaagccat ... ttgtgttgcaGAAATGATGAGGAAGGTCTTGTCTTTTCTCAACTTTTAAATCTGTCTAGAT
EST: gi|209696783|gb|BW680404.1|BW680404
EST:     CCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAA                         TAAATGATGAGGAAGGTCTTGTCTTTTCTCAACTTTTAAATCTGTCTAGAT
genomic: CCCATCAACAGTTGTATTGCTTGATCACTTGGGCTTTTGCAAACCACCAAtgtaagccat ... ttgtgttgcaGAAATGATGAGGAAGGTCTTGTCTTTTCTCAACTTTTAAATCTGTCTAGAT