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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGgtgagtcgcactcgcatatttcgcttaacatttgtttgattatgattattattattagtagtagtagtagtagttcagtgaaggattcctatattattat...

Basic information

species Glycine max
transcript GLYMA18G51520.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51520.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g02040.1 (Oryza sativa), 5'ss of exon 6
TGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGgtgagtcgcactcgcatatttcgcttaacatttgtttgattatgattattattattagtagtagtagtagta-gttcagtgaaggatt----cctatattattat
||||||||  |||||||| ||||| || || ||||| ||||| ||| | |||||||| || |||||  ||||| | |||||||||||||| ||||| ||||| ||    |   | |  |     | |   ||| || ||| |||   |  || | || || |   | ||||| ||||| | |    ||    ||| ||| ||   
TGATGTATTCTCTTTTGGCGTTGTTCTCTTAGAGCTTATTACCGGTAGAAAGCCTGTTGACGCATCAAAACCATTGGGTGATGAGAGCCTTGTTGAGTGGgtaagctatatcagtaactagaaatcatttttttttagataatgg--aagatgagta-tattgaaattagtatgttcaataagatttttgcccctgtatgatc--

upper sequence: GLYMA18G51520.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G38560.1 (Arabidopsis thaliana), 5'ss of exon 6
TGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGgtgagtcgcactcgcatatttcgcttaacatttgtttgattatgattattattattagtagtagtagtagtagttcagtgaaggattcctatattattat
 ||||| ||||| | ||||||  | || |||||||| || || || || || || |||||| | ||||||||| |||||||||||||||| ||||||||||| ||| |||     |  |||  |   | |||| ||  | |   || |||   |  |||              ||  || |   |  | | |||||    
AGATGTTTATTCGTATGGGGTAATACTGTTGGAGCTTATAACTGGCCGTAAACCCGTAGATACGTCTCAACCACTTGGTGATGAGAGCCTTGTTGAATGGgtaagt-gcagctcta-gttttacc--atatttcttgaacttccatgatt-caacaagtgtcttctaaccccctttggttacataa-cttttattag---

upper sequence: GLYMA18G51520.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0083g00330.t01 (Vitis vinifera), 5'ss of exon 6
TGATGTATATTCTTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGgtgagtcgcactcgcatatttcgcttaaca-tttgtttgattatgattattattatt-agtagtagtagtagtagttcagtgaag-gattcctatattattat
 ||||| ||||| ||||||||||||||||| || || ||||||||||| || |||||||| |||||||||||| | || ||||| ||||||||||||||||| ||    |    ||||   |    || |  || | |  ||     ||||||   | |  || ||| | | ||||| |  | |  ||    | | ||| |  
CGATGTTTATTCATTTGGGGTTGTGCTTTTAGAACTGATTACAGGTCGTAAACCTGTAGACGCATCTCAACCATTGGGAGATGAAAGCCTGGTTGAATGGgtaagctttatgaacataaaccttggaagaacttatcttcttgctcgtattatctctgaacagaagttg-aatagtttatcgtattgaaggttgttttaat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298178965|gb|HO024700.1|HO024700
EST:     AGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGG                         GCTCGACCTCTGTTGACGGAAGCACTTGACAATGAGGACTTTGAAATTTTG
genomic: AGCCTGTAGATGCATCTCAACCAATTGGTGATGAGAGCCTGGTTGAATGGgtgagtcgca ... ttatttccagGCTCGACCTCTGTTGACGGAAGCACTTGACAATGAGGACTTTGAAATTTTG