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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcctttgattttgtctttctatatctgccagataatcccttactaccatccatatatttcag

Basic information

species Glycine max
transcript GLYMA18G49770.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G49770.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0108g01230.t01 (Vitis vinifera), 5'ss of exon 7
ATTGATGAGGAGATCCTTCAGGAAGTGGTGAAAATGGGATTTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgt---------ttgtgcctttga---ttttgtct-ttctatatctgccagataatcccttactaccatccatatatttcag-----------------------------------------
|||||||||||||| |||||||||||||| || ||||||||||||||||||| | | |||||||||||| | |||||  |||||||||| ||          ||  ||||  |     |||| | || | ||||  ||||||        |  |  |   |  ||||  |                                          
ATTGATGAGGAGATTCTTCAGGAAGTGGTTAAGATGGGATTTGACAGGAATCTACTTGTTGAATCTCTTCGCAACAGAGTACAAAATGATgtataccattcctgacccttcaaactccttgtgtcttttctatcctccagatcccaaaaaaaaaaaaaaaacttattataattttccaattctgctttctgagttcttgcaaaatatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259831|gb|BG882739.1|BG882739
EST:     TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG                         GGTACTGTGGCATACTATTTGTTATTGGACAACCGATTTCGTGTTTCCAGT
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcct ... tatatttcagGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTTCGTGTTTCCAGT
EST: gi|207718492|gb|GD700064.1|GD700064
EST:     TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG                         GGTACTGTGGCATACTATTTGTTATTGGACAACCGATTTCGTGTTTCCAGT
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcct ... tatatttcagGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTTCGTGTTTCCAGT
EST: gi|151395613|gb|EV265490.1|EV265490
EST:     TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAG                         GGTACTGTGGCATACTATTTGTTATTGGACAACCGATTTCGTGTTTCCAGT
genomic: TTGACAGGAATCAATTGGTTGAATCTCTTGGGAACAGGATACAAAATGAGgtttgtgcct ... tatatttcagGGTACTGTGGCATACTATTTGTTATTGGACAACCGATTTCGTGTTTCCAGT