Sequence
atgc intronic sequence ATGC exonic sequenceATGCAGCTGGTGATCTTTGTGCTATTTGCCAGGAGAAGATGCATGCTCCCATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGCGTATCAGAGTGgtgagacttgccttgctgttgtttatcttgtgtactggtctgcataacaatctgacattgccattttcatttgagttgaataatctttaaacttgattac...
Basic information
species | Glycine max |
transcript | GLYMA18G45010.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G45010.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g25180.1 (Oryza sativa), 5'ss of exon 7
ATGCAGCTGGTGATCTTTGTGCTATTTGCCAGGAGAAGATGCATGCTCCCATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGCGTATCAGAGTGgtgagacttgccttgctgttgtttatcttgtgtactggtctgcataacaatctgacattgccattttcatttgagttgaataatct-ttaaacttgattac--
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TTGCTGCTGGTGATATGTGTGCCATCTGCCAGGAAAAGATGCATGTTCCTGTCCTCCTCCGCTGTAAACATATTTTCTGTGAGGACTGTGTCTCTGAATGgtaaa--ttcttttcttattttatacttttttacatgctttatttggttctttgggcct-ttgttttgaattgagcaaggtatcttgttggatatggcaacat
upper sequence: GLYMA18G45010.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G061980_T01 (Zea mays), 5'ss of exon 7
ATGCAGCTGGTGATCTTTGTGCTATTTGCCAGGAGAAGATGCATGCTCCCATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGCGTATCAGAGTGgtgagacttgccttgctgttgtttatcttgtgtactggtctgcataacaatctgacattgccattttcatttgagttgaataatctttaaacttgattac-
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TTGCTGCTGGTGATATGTGTGCCATTTGCCAGGAGAAGATGCATGTGCCTGTTCTCCTTCGCTGTAAACATATTTTCTGTGAAGACTGTGTTTCCGAATGgtaatattcatcgt-ttgctgttccgcatgcactgttctttgtatctttgttttgaatcaggcatctagttgaatatgtttactgtattctttggtgtgct
upper sequence: GLYMA18G45010.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G141216_T01 (Zea mays), 5'ss of exon 7
ATGCAGCTGGTGATCTTTGTGCTATTTGCCAGGAGAAGATGCATGCTCCCATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGCGTATCAGAGTGgtgag------acttgccttgctgttgtttatcttgtgtactggtctgcataacaatctgacattgc-cattttcatttgagttgaataatc-tttaaacttgattac--------------------
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TTGCTGCTGGAGACTTGTGTGCGATATGCCAAGAAAAGATGCATGTTCCCATCCTTTTGCGCTGCAAACATATCTTCTGTGAAGATTGTGTATCCGAATGgtaattcacatacccccaccctcgccgtctaccgtgcgtg-tggcctttcctatgcactattcttacacatctttcactgatttcattacccatttctgctttcttggcgttgtttggactatggaag
upper sequence: GLYMA18G45010.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0056g00440.t01 (Vitis vinifera), 5'ss of exon 7
ATGCAGCTGGTGATCTTTGTGCTATTTGCCAGGAGAAGATGCATGCTCCCATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGCGTATCAGAGTGgtgagacttgccttgctgttgtttatcttgtgtactggtctgcataacaatctgacat-tgccattttcatttgagttga----ataatctttaaacttgattac
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ATGCAGCTGGGGATCTGTGCGCTATTTGCCAGGAGAAGATGCATGCTCCAATCTTACTTCGTTGTAAACACATCTTTTGTGAAGACTGTGTATCTGAGTGgttag--tttcttgcctcttcctcctgctgtg-actgggttgtcctcctgtttgctgtatgaaattggagttggtagtgatgcaaaagtcatttgttcttttt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15814325|gb|BI786600.1|BI786600EST: ATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGCGTATCAGAGTG GTTTGAGAGAGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCCGC
genomic: ATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGCGTATCAGAGTGgtgagacttg ... attttgccagGTTTGAGAGAGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCCGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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ATGCAGCTGGTGATCTTTGTGCTATTTGCCAGGAGAAGATGCATGCTCCCATCTTACTACGTTGTAAACATATTTTCTGTGAAGATTGCGTATCAGAGTGgtgagacttgccttgctgttgtttatcttgtgtactggtctgcataacaatctgacattgccattttcatttgagttgaataatctttaaacttgattac
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