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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAACCAGAGTTGTTTCCTGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACGGGAGCCAAggtataataatggtcttggatcttcccatgtaattttacattttggcattttccggctgatgttttcattttggtttcttta

Basic information

species Glycine max
transcript GLYMA18G44460.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44460.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 8
ATGAACCAGAGTTGTTTCCTGGACTAATCTATCGCATGAAGCAACCCAAGATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACGGGAGCCAAggtataataatggtcttggatcttcc-------catgtaattttacattttggcattt--------tccggctgatgttttcattttggtttcttta--------------
 ||||||||| ||||| |||||  | |||||||| ||||| ||||| ||||| ||  ||||||| ||||| || || ||||||||||| || ||||| |||||    | ||    |||  | || |       | ||   | || | | ||||  |||         | || || |   || |||    ||  ||||              
-TGAACCAGAATTGTTCCCTGGCTTGATCTATCGAATGAAACAACCAAAGATTGTGCTGCTTATCTTTGTGTCAGGGAAAATTGTTCTCACTGGAGCTAAGgtgatgtcatatgtttgtttgttgcttgaattcttggggtcttccctattggattttatatttgtcctggatggtcacttaattggaattattttatgtcccaacttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12688015|gb|BG154351.1|BG154351
EST:     ATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACGGGAGCCAA                         GGTTAGAGATGAGACTTACACAGCCTTTGAGAACATATATCCAGTGCTTAC
genomic: ATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACGGGAGCCAAggtataataa ... ggtttctttaGGTTAGAGATGAGACTTACACAGCCTTTGAGAACATATATCCAGTGCTTAC
EST: gi|31467402|gb|CD409430.1|CD409430
EST:     ATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACGGGAGCCAA                         GGTTAGAGATGAGACTTACACAGCCTTTGAGAACATATATCCAGTGCTTAC
genomic: ATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACGGGAGCCAAggtataataa ... ggtttctttaGGTTAGAGATGAGACTTACACAGCCTTTGAGAACATATATCCAGTGCTTAC
EST: gi|9440109|gb|BE440620.1|BE440620
EST:     ATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACGGGAGCCAA                         GGTTAGAGATGAGACTTACACAGCCTTTGAGAACATATATCCAGTGCTTAC
genomic: ATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTGACGGGAGCCAAggtataataa ... ggtttctttaGGTTAGAGATGAGACTTACACAGCCTTTGAGAACATATATCCAGTGCTTAC