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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCAGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGgtaggtctcaactctccctatccttctgctgacttgctaaattaacatggtatttttttagcatctccagtgattcagcatgcaattttggtattttttttgtcttacattgatcattattttgttctgcag

Basic information

species Glycine max
transcript GLYMA18G44210.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G048067_T02 (Zea mays), 5'ss of exon 7
ATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCAGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGgta-ggtctcaactctccctatccttctgctgacttgctaaattaacatggtatttttttagcatctccagtgattcagcatgcaattttggtattttttttgtcttacattgatcattattttgttctgcag
|| |||||  | | ||||||||| || || ||||| || ||  | |||||||| ||||| ||  |||| ||||| ||||| |||||||||||||||||||||| ||  ||  |  |   || | || ||  ||      ||| ||    |  | || || |            |||||  ||  ||| |  |  || |||| |  |||   ||||     |||   | |||||
ATTCCTGGAAGGCAAAATGACCGTAAAACTCTTCTTGGGGAGCTCAATTGGATTTTTACTGCTATAACAGATACAATTGCATGGAATGTTCTTCCTCATGgtatggcgtctgcgatgtata-ctttttggggatcaagaaaactaga--gaaaattattcaa-----------attcaaaata-aatgtcagc-ttattttgggttta---tgatacaagtttcactgtgcag

upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G08850.1 (Arabidopsis thaliana), 5'ss of exon 7
ATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCAGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGgtaggtctcaactctccctatccttctgctgacttgctaaattaacatggtatttttttagcatctccagtgattcagcatgcaattttggtattttttttgtcttacattgatcattattttgttctgcag
|| || ||||| | ||| || || |||||| |  | || || ||||| ||||| || |||||||| || ||||| ||||| |||||||| |||||||||||||        ||   || | | ||||||        ||| ||| || ||        ||  |||| |     ||||   ||  | ||     |||| | |||| | |||  || ||  ||||   ||||||
ATTCCAGGCCGGCAAAACGATCGTAAGACATTGTTAGGGGAGTTGAACTGGATTTTCACAGCAGTGACGGATACAATTGCTTGGAATGTGCTTCCTCATGgta--------cttctccaaactttctgca-------taatttatcaaggg-------taa-atcttc-----ttcaagttg--acttc----ttttctgtgtcct-catgaatgatagttttaccctgcag

upper sequence: GLYMA18G44210.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0058g00890.t01 (Vitis vinifera), 5'ss of exon 7
ATCCCTGGCCGTCCAAATGACCGAAAGACACTTCTGGGTGAATTGAATTGGATCTTTACAGCAGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGgtaggtctcaactctccctatccttctgctgacttgctaaattaacatggtatttttttagcatctccagtgattcagcatgcaattttggtattttttttgtcttacattgatcattattttgttctgcag
|| |||||||| | ||||||||| || |||||| |||| ||| |||| ||||||||||||||||| ||||| || ||||| |||||||||||||| |||||||  |       ||  ||    || |||   | ||   ||| | | || ||  ||||||   | |                   ||||  | |  ||   ||  || ||  ||  ||||||||| ||||||
ATTCCTGGCCGCCAAAATGACCGCAAAACACTTTTGGGAGAACTGAACTGGATCTTTACAGCAGTGACTGACACCATTGCTTGGAATGTTCTTCCCCATGgtaatttaattggcttactgattttatgc-agcatgagcaatcagc-tgttaaatttttaatttgt-------------------ttttattctccttacggtggtatatgcatatttattttgtgctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193388895|gb|FK353570.1|FK353570
EST:     GATCTTTACAGCCGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATG                         ATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTC
genomic: GATCTTTACAGCAGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGgtaggtctca ... tgttctgcagATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTC
EST: gi|6916382|gb|AW397912.1|AW397912
EST:     GATCTTTACAGCAGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATG                         ATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTC
genomic: GATCTTTACAGCAGTAACTGATACGATTGCCTGGAATGTTCTTCCTCATGgtaggtctca ... tgttctgcagATCTTTTTCAGAGACTGTTCAGACAGGATTTGCTTGTTGCAAGTCTGTTTC