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GGTTTGTCTGTGAGCTTTCTCAGCATAATCTTGCTACCAATAGTTGGAAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttgggagagtgctataaacttttcacacttcccctcatttaacataatattcatattggccaagcaatattttttttaattaattaaaatgttaaactaaagtaatgccttgaccacagg
species | Glycine max |
transcript | GLYMA18G43000.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|207788083|gb|GD760173.1|GD760173
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGEST: gi|15001206|gb|BI322020.1|BI322020
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|120530398|gb|EH258531.1|EH258531
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|5126723|gb|AI748459.1|AI748459
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|208041498|gb|GD840344.1|GD840344
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGTATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|6094836|gb|AW119450.1|AW119450
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|208102353|gb|GD897808.1|GD897808
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: AAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGGTTCAGCAACTCAGATTGCCATG-TTEST: gi|208068157|gb|GD861891.1|GD861891
genomic: AAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATT-GGGTTCAGCAACTCAGATTGCCATGTTT
EST: AAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|193512048|gb|FK466796.1|FK466796
genomic: AAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: CAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|26048877|gb|CA785330.1|CA785330
genomic: CAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|193462335|gb|FK426834.1|FK426834
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|6913524|gb|AW395054.1|AW395054
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|193558285|gb|FK514138.1|FK514138
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|193469973|gb|FK437314.1|FK437314
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|207717379|gb|GD699848.1|GD699848
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: CAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAAACAAAGCTGG ACATTTCATTGGGTGTTGCATTEST: gi|193642808|gb|FK592834.1|FK592834
genomic: CAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAA-CAA-GCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATT
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|193715677|gb|FK655868.1|FK655868
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCGACTCAGATTGCCATGTTTGEST: gi|193448992|gb|FK414263.1|FK414263
genomic: TGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGEST: gi|6952300|gb|AW424368.1|AW424368
genomic: TCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGAGTGTTGCATTGAGTTCAGCAACTCAGATTGCCATGTATGEST: gi|208206484|gb|GE007931.1|GE007931
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTG
EST: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGG ACATTTCATTGGGTGTTGCATT
genomic: TGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttg ... tgaccacaggACATTTCATTGGGTGTTGCATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTTGTCTGTGAGCTTTCTCAGCATAATCTTGCTACCAATAGTTGGAAATGCAGCTGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGtgagaacttgggagagtgctataaacttttcacacttcccctcatttaacataatattcatattggccaagcaatattttttttaattaattaaaatgttaaactaaagtaatgccttgaccacagg
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG