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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGGACGAACTTGGATTGATTCATCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTGggtatgactactttctcttgccatcaaatgttcactcgtaacctactatttcttgctcagtatgtggagttgtgcacttttaatttaataatttattcagtgctgctgttatatatcttatcaacttaaaaagatttttgcatttgca

Basic information

species Glycine max
transcript GLYMA18G39880.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G39880.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 5'ss of exon 7
TTTGGACGAACTTGGATTGATTCATCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTGggtatgactactttctcttgccatcaaatgttcactcgtaacctactatttcttgctcagtatgtggagttgtgcacttttaatttaataatt-tattcagtgctgctgttatatatcttatcaacttaaaaagatttttgcatttgca
 |||| || |||||| |||||||  | ||||||||| |  ||||||| ||||| || || |||||||| ||||| |  || || ||||| |||||||||||||||||  ||  |            | |||  ||| | || || |    |     | |   |||    || ||     ||  ||| | ||||  ||| | || | |                                          
-TTGGGCGTACTTGGGTTGATTCTCCTGGAGAGATGGTATTGACAAACCTGACAACTGGAGACAAAGTTGTGCTTTTATTCCAGCCATGTGGCTGGTTTGGgtatgataacactaatcc-----tgactgtctact-gcaatcttcagccttgaattaatattgtaattttatgtttccttcgttttagaattacattgaatgttcc------------------------------------------

upper sequence: GLYMA18G39880.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G174644_T01 (Zea mays), 5'ss of exon 7
TTTGGACGAACTTGGATTGATTCATCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTGggtatgactactttctcttgccatcaaat-gttcactcgtaaccta-ctatttcttgctcagtatgtggagttgtgcacttttaatttaataatttattcagtgctgctgttatatatcttatcaacttaaaaagatttttgcatttgca
 |||| || |||||| |||||||  | ||||||||| || |||| || ||||| || || |||||||| ||||| ||||| || |||||||||||||||||||||||          | |||||||| |  |||   | |  | |  |  ||    ||||    ||   | || | || ||||    || ||| ||          ||| ||||  ||                                
-TTGGGCGCACTTGGGTTGATTCTCCTGGAGAGATGGTCATGACGAACCTGACAACTGGAGACAAAGTTGTGCTATATTTCCAGCCATGCGGCTGGTTTGGgtatgata-------ttggccatcaatttattcttgcatttcttgtccgttgacagctcctgttgccaaattattcagtttttcagtagtaactt----------gcttttatgcat--------------------------------

upper sequence: GLYMA18G39880.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv08s0007g00480.t01 (Vitis vinifera), 5'ss of exon 7
TTTGGACGAACTTGGATTGATTCATCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTGggtatgactactttctcttgccatcaaatgttcactcgtaacctactatttcttgctcagtatgtggagttgtgcacttttaattta-ataatttattcagtgctgctgttatatatcttatcaacttaaaaagatttttgcatttgca
 ||||||| |||||| |||||||| |||| ||||||||| |||||||  |||| || ||||||||||| ||  | |||||||||||||| |||||||| |||||||      || | ||         |||| | |  |      ||| | | ||  ||  ||     |   | || |  | ||    | ||| | ||  |||                                              
-TTGGACGTACTTGGGTTGATTCACCAGGGGAGATGATCATGACAAACTTGACCACTGGGGACAAAGTCGTATTATATTTTCAACCATGTGGCTGGTTCGGgtatgggcttcttttatttttggtgg-tgttaattgctg--tggctagtgcatgagcaa-attacatgcctttcattcctgatgggcacaatcttttttgtggc--------------------------------------------

upper sequence: GLYMA18G39880.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S20_97V6.1 (Physcomitrella patens), 5'ss of exon 7
TTTGGACGAACTTGGATTGATTCATCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTGggta--tgactactttctc-ttgccatcaaatgttcactcgtaacctactatttcttgctcagt---atgtggagttgtgcacttttaatttaat--aattta-ttcagtgc--tgctgttatatat-cttatcaacttaaaaagatttttgcatttgca-----------
 |||||||||||||| | |||||  |||| || ||| || |||||||||| || |||||||| ||||| ||||| || ||||| |||||    ||||| |||||  || || | |   |    || || ||   |   |  |  | ||  ||||| |      |   |||      || |    |||| |    |  ||| || ||| |     ||    || | || ||  |     |  || |  |  |||    |             
-TTGGACGAACTTGGGTAGATTCCCCAGGCGACATGGTCATGACAAATCTCACAACAGGGGAGAAAGTTGTGCTTTACTTTCATCCATGTAATTGGTTCGGgtaattgtcttcgtcgccaccaccctcgaagcgttttttttcccttatcatttcatttgtgtttcgatgcaacagtgcgactctttagtgcggtcaaatgtagttctgcagcatgtctctaaacatgctcctttttcttcaatgcgtaatgctcccggtccttaatgcag

upper sequence: GLYMA18G39880.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ08612 (Selaginella moellendorffii), 5'ss of exon 7
TTTGGACGAACTTGGATTGATTCATCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTGggtatgactactttctcttgccatcaaatgttcactcgtaacctactattt-cttgctcagtatgtggagttgtgcacttttaatttaataatttattcagtgctgctgttatatatcttatcaacttaaaaagatttttgcatttgca
 ||||  |||| ||||| || ||  | |||||     |  |||||||||| || || || ||||||||| | || ||||||||||| || ||||||||||||||  |  |   ||| |     |   |||| |  | ||| | |||| |||  ||||  ||                                                                                        
-TTGGCAGAACGTGGATAGACTCTCCCGGAGATTATGTTGTGACAAATCTCACGACTGGCGACAAAGTGATCCTTTATTTTCAACCCTGTGGCTGGTTTGGgtaaaatcagagtctttc----tttgatgtgcg-tagta-cttactgtttgtttgcaaag----------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254346588|gb|GR856310.1|GR856310
EST:     ACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCCATGCGGCTGGTTTG                         GAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAG-
genomic: ACTACAGGGGACAAAGTGGTGCTGTATTTTCAA-CCATGCGGCTGGTTTGggtatgacta ... tgcatttgcaGAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGC
EST: gi|7686507|gb|AW757155.1|AW757155
EST:     GACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTG                         GAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGC
genomic: GACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTGggtatgacta ... tgcatttgcaGAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGC
EST: gi|254346587|gb|GR856309.1|GR856309
EST:     GACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTG                         GAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGC
genomic: GACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTGggtatgacta ... tgcatttgcaGAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGC