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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTACTGCTAACAGCCCGTCAGTCACCACATTGAATGGGAGAAAAACTAGAAGTCATCTCATTTCTGAACCTACTGCACATCCATCTATGCTTCTTCAGGtccagtgccttttttttttctccttactcctaatacttttcacctgcatgtgtacatcaaccatcagcatattacacaattaaatttataatctaaggcc...

Basic information

species Glycine max
transcript GLYMA18G22930.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G22930.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv17s0000g04330.t01 (Vitis vinifera), 5'ss of exon 6
-ACTACTGCTAACAGCCCGTCAGTCACCACATTGAATGGGAGAAAAACTAGAAGTCATCTCATTTCTGAACCTACTGCACATCCATCTATGCTTCTTCAGGtccagtgccttttttttttc-tccttactcctaatacttttcacctgcatgtgtacatcaaccatcagcatattacacaattaaatttataatctaaggcc-
 ||||| ||||||||||| |||||  |||| || ||||| |||||||| ||||| ||| |||||||||| ||| |||||  ||| || |||||||||||||| |||||   ||||  |  | |   | || |   |||   || | || | || |   |    | |||  |   |  |||   | ||  ||| |||    |  
AACTACAGCTAACAGCCCTTCAGTGGCCACTTTAAATGGAAGAAAAACAAGAAGCCATGTCATTTCTGAGCCTGCTGCAGCTCCCTCAATGCTTCTTCAGgtacagtgatattttcctaccattgcttcttcaggtacaggtcccttgaa-gtattggttg--cttcaagaggatgtacatgcatataaatagtctggttcaa