Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGGATTGGCTGAAGTTCGAAGGTCTAGAAGGCTGACAGTGTCTTTTATATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaagttaaatatccaagcatttatctgtgagtcagttgaatgatattggtagaaccatcaattatttttaggcctatatacttcctttcttttaaataca...

Basic information

species Glycine max
transcript GLYMA18G20800.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G20800.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g40040.1 (Oryza sativa), 5'ss of exon 8
-ACAGGATTGGCTGAAGTTCGAAGGTCTAGAAGGCTGACAGTGTCTTTTATATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaagttaaatatccaagcatttatctgtgagtcagttgaatgatattggtagaaccatcaattatttttaggcctatatacttcctttcttttaaataca--
 || || || || |||||| | ||||| || ||||| || || || ||||| ||||| || || |||||||| ||||| |||| ||||||||||||||||| || |     | |  |  |||  |      | |   | |  |||   | |  ||||   ||    |  ||  ||| | |    | |||  |     ||    
AACTGGTTTAGCAGAAGTTAGGAGGTCAAGGAGGCTTACTGTTTCATTTATCTGCACAGTTGCCAACTATGAATATGGTTTTTACTGGCACTTTTATCAGgtaattgtttcaactgactattccttataatgcc--ctcagcgattaagctgtaacctataaaggctgatattcct-tctgtagcttttggtacggttatgca

upper sequence: GLYMA18G20800.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G147884_T01 (Zea mays), 5'ss of exon 7
-ACAGGATTGGCTGAAGTTCGAAGGTCTAGAAGGCTGACAGTGTCTTTTATATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaa-gttaaatatccaagcatttatctgtgagtcagttgaatgatattggtagaaccatcaattatttttaggcctatatac-ttcctttcttttaaataca
 || || || || |||||  |  |||| || ||||| || || || ||||| || || || || |||||||||||||| |||| ||||||||| ||||||| ||  ||  || |||    ||     |   |   |  |  |  || |   || ||    ||||   | |     ||||| |  ||  || |   | | |   
AACTGGTTTAGCAGAAGTAAGGCGGTCAAGGAGGCTCACTGTTTCATTTATCTGTACAGTTGCAAACTATGAGTATGGTTTTTACTGGCACTTCTATCAGgtaatatttcatttcctcttataatgttacaaagtaagt--accatttacctacaatacccaatatatatattatctatacaagttgattaccgctcactga-

upper sequence: GLYMA18G20800.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv00s0225g00090.t01 (Vitis vinifera), 5'ss of exon 7
-ACAGGATTGGCTGAAGTTCGAAGGTCTAGAAGGCTGACAGTGTCTTTTATATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaagttaaatatccaagcatttatctgtgagtc--agttgaatgatattggtagaacc------atcaattatttttaggcctatatacttcctttcttttaaataca
 |||||  | || || |||||  | ||||||||||| |||||||||||| |||||||||| || ||||||||||| ||||| |||||||| |||||||||||||||||||| |||     ||| | |  |  |   | ||   |  | |||   | |        || ||||||| | |   | |     |  |||||||         
AACAGGTCTAGCAGAGGTTCGTCGTTCTAGAAGGCTAACAGTGTCTTTTGTATGCACTGTTGCAAACTATGAGTACGGATTCTTCTGGCATTTTTATCAGgcaagttaaatttcccttattttgtttcaggatttaatttttcttctcttgtgcggattggcaagataaattattctcatctcaaagctatcactttctt---------

upper sequence: GLYMA18G20800.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ14061 (Selaginella moellendorffii), 5'ss of exon 6
-ACAGGATTGGCTGAAGTTCGAAGGTCTAGAAGGCTGACAGTGTCTTTTATATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaagttaaatatccaagcatttatctgtgagtcagttgaatgatattggtagaaccatcaattatttttaggcctatatacttcctttcttttaaataca
 |||||  |  ||||||| ||||| |||||| |||| || || ||||| ||||||||||| || ||||| || ||||| || | ||||||||| || |||| |  | ||     |||||||    ||   | ||      |   |||   || | |   | | |                                     
GACAGGTCTTTCTGAAGTCCGAAGATCTAGACGGCTCACCGTTTCTTTCATATGCACTGTCGCAAACTACGACTATGGCTTCTACTGGCACTTCTACCAGgtagatcaa-----caagcatc---ctaacaatcc-----agactatcactaaagctccctacttag----------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21256389|gb|BQ453277.1|BQ453277
EST:     ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACCTTTATCAGG                         ATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
genomic: ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaagttaaat ... ttccttcaggATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
EST: gi|23729021|gb|BU762587.1|BU762587
EST:     ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACCTTTATCAGG                         ATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
genomic: ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaagttaaat ... ttccttcaggATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
EST: gi|151405881|gb|EV275696.1|EV275696
EST:     ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGG                         ATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAG-AT
genomic: ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaagttaaat ... ttccttcaggATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
EST: gi|193435597|gb|FK402407.1|FK402407
EST:     ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGG                         ATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
genomic: ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaagttaaat ... ttccttcaggATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
EST: gi|21887761|gb|BQ740974.1|BQ740974
EST:     ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGG                         ATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
genomic: ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaagttaaat ... ttccttcaggATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
EST: gi|18733865|gb|BM527856.1|BM527856
EST:     GGATTTTTCTGGCACTTTTATCAGG                         ATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
genomic: GGATTTTTCTGGCACTTTTATCAGGcaagttaaat ... ttccttcaggATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
EST: gi|151405414|gb|EV275228.1|EV275228
EST:     ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGG                         ATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
genomic: ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaagttaaat ... ttccttcaggATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
EST: gi|192322691|gb|FK014382.1|FK014382
EST:     ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTACCAGG                         ATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT
genomic: ATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaagttaaat ... ttccttcaggATGGAAAAATAGAAGCAGAGATCAAGCTCACAGGAATTCTCAGCTTAGGAT