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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTACAGCCTCATCTACCGGGCCCCTGAAGAAAATGGTGTAAAGGCTGCCTGTGATGAACTTGGGATAACAATAATTGCATATTCACCAATTGCTCAAGgtgaactccttttcattattggatatgtttggtatgtctattttataatttttttaaatttttttaaatttaacatatctgccaaaaccagaggtataac...

Basic information

species Glycine max
transcript GLYMA18G14510.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G14510.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv12s0028g01100.t01 (Vitis vinifera), 5'ss of exon 7
AACTACAGCCTCATCTACCGGGCCCCTGAAGAAAATGGTGTAAAGGCTGCCTGTGATGAACTTGGGATAACAATAATTGCATATTCACCAATTGCTCAAGgtgaactcct--tttcattattggatatgtttggtatgtctattttataatttttttaaatttttttaaatttaacatatctgccaaaaccagaggtataac
|| ||||||||  | ||| ||   || || || ||||| || |||||||||||||||||||||||| | ||  | |||||||||||||| ||||||||||||||| | |   |||||||||     |  ||  || | | |  ||  |  | |        |  ||   |||| | ||||  |   |||  ||   |   | 
AATTACAGCCTTTTATACAGGCTTCCAGAGGAGAATGGGGTGAAGGCTGCCTGTGATGAACTTGGGGTTACTTTGATTGCATATTCACCTATTGCTCAAGgtgaaattccaatttcattatgttccaacttcagtgtatattattggttctatgcagtctctcattaccatttgatatatgagttcaaag-agttttgcga-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12690416|gb|BG156752.1|BG156752
EST:     CTGTGATGAACTTGGGATAACAATAATTGCATATTCACCAATTGCTCAAG                         GTGCTCTCACTGGAAAGTATACTCCTGATAAACCACCAAGTGGGCCAAGGG
genomic: CTGTGATGAACTTGGGATAACAATAATTGCATATTCACCAATTGCTCAAGgtgaactcct ... tcttaaacagGTGCTCTCACTGGAAAGTATACTCCTGATAAACCACCAAGTGGGCCAAGGG