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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTTTCATACAAGGACATTGATGGATATAGATACAAGAGAGATGTTCTGTTCTGTTATGATCTAAAACTTCCAAAAGATTTCATTCCGAAAAATAAAggtgagccgtacatgttcttcaaatttactgttgttatgttctagtggtgccatgatcaccctttgtgataactggtttaataaaatatca

Basic information

species Glycine max
transcript GLYMA18G08420.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08420.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os09g15340.1 (Oryza sativa), 5'ss of exon 7
TGCTGTTTCATACAAGGACATTGATGGATATAGATACAAGAGAGATGTTCTGTTCTGTTATGATCTAAAACTTCCAAAAGATTTCATTCCGAAAAATAAAggtgagccgtacatgttcttcaaatttactgttgttatgttctagtggtgccatgatcaccc-tttgtgataactggtttaataaaatatca--------------------------------
 ||  | || |||| ||| ||||| || | ||||||||| || |||||||| ||||||||||| || ||||||||   ||||||  |||| || ||| ||||| | |  | |   ||   || |   ||      |     | |    ||| ||  |   |  ||    |||| ||||    ||  ||   |                                
-GCGATCTCTTACATGGATATTGAAGGGTTTAGATACAAAAGGGATGTTCTCTTCTGTTATGACCTTAAACTTCCTCCAGATTTTGTTCCTAATAATGAAGgtaaac-attcccatttggcaga---acaaaaacttgaccccaaccatgctatacttctctgttctctataaatggtactctagcatgaaaatatttaatgaatcttctaccaactcttgcag

upper sequence: GLYMA18G08420.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g04320.t01 (Vitis vinifera), 5'ss of exon 7
TGCTGTTTCATACAAGGACATTGATGGATATAGATACAAGAGAGATGTTCTGTTCTGTTATGATCTAAAACTTCCAAAAGATTTCATTCCGAAAAATAAAggtgagc-cgtacatgttc--ttcaaatttactgttgttatgttctagtggtgccatgatc-accctttgtgataac-tggtttaataaaatatca--------------------------------------------------------------------------------------------------------
 ||||| |||||    ||||||||||| ||| |||||||| |||||||| | || ||||||||| ||||||| ||  | ||||||||||| || ||  ||||| | |   |  ||| ||   |   ||  | |||  | |    ||  |  | |     |  |    |||| | |       | | |     | ||                                                                                                        
-GCTGTCTCATATGGTGACATTGATGGGTATCGATACAAGCGAGATGTTTTATTTTGTTATGATTTAAAACTCCCTGACGATTTCATTCCTAAGAACCAAGgtaaacatattgatgctcagctttcatcaattgtcatcacaacctcattcttcttcactttagaaattgtaaaattgcaactcagtcttggagcatttgctttgtttccaactttccatttcatttggaagttattaactgcaatatttttctttggattcaatccatcccccttaatggcttcttaaacatgtaacag

upper sequence: GLYMA18G08420.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv11s0016g04300.t01 (Vitis vinifera), 5'ss of exon 6
TGCTGTTTCATACAAGGACATTGATGGATATAGATACAAGAGAGATGTTCTGTTCTGTTATGATCTAAAACTTCCAAAAGATTTCATTCCGAAAAATAAAggtgagc-cgtacatgttc--ttcaaatttactgttgttatgttctagtggtgccatgatc-accctttgtgataac-tggtttaataaaatatca--------------------------------------------------------------------------------------------------------
 ||||| |||||    ||||||||||| |||||||||||| |||||||| | || ||||||||| ||||||| ||  | ||||||||||| || ||  ||||| | |   |  ||| ||  ||   ||  | |||  | |    ||  |  | |     |  |    |||| | |       | | |     | ||                                                                                                        
-GCTGTCTCATATGGTGACATTGATGGGTATAGATACAAGCGAGATGTTTTATTTTGTTATGATTTAAAACTCCCTGACGATTTCATTCCTAAGAACCAAGgtaaacatattgatgctcagttttcatcaattgtcatcacaacctcattcttctccactttagaaattgtaaaattgcaactcagtcttggagcatttgctttgtttccaactttccatttcatttggaagttattaactgcaatatttttctttggattcaatccatcccccttaatggcttcttaaacatgtaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22928985|gb|BU546124.1|BU546124
EST:     TGTTCTGTTATGATCTAAAACTTCCAAAAGATTTCATTCCGAAAAATAAA                         GATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACACAAGTTGCAGAA
genomic: TGTTCTGTTATGATCTAAAACTTCCAAAAGATTTCATTCCGAAAAATAAAggtgagccgt ... taaaatatcaGATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACACAAGTTGCAGAA
EST: gi|31466953|gb|CD408981.1|CD408981
EST:     TGTTCTGTTATGATCTAAAACTTCCGAAAGATTTCATTCCGAAAAATAAA                         GATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACACAAGTTGCAGAA
genomic: TGTTCTGTTATGATCTAAAACTTCCAAAAGATTTCATTCCGAAAAATAAAggtgagccgt ... taaaatatcaGATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACACAAGTTGCAGAA
EST: gi|10235626|gb|BE804514.1|BE804514
EST:     TGTTCTGTTATGATCTAAAACTTCCAAAAGATTTCATTCCGAAAAATAAA                         GATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACACAAGTTGCAGAA
genomic: TGTTCTGTTATGATCTAAAACTTCCAAAAGATTTCATTCCGAAAAATAAAggtgagccgt ... taaaatatcaGATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACACAAGTTGCAGAA
EST: gi|31561695|gb|CD487533.1|CD487533
EST:     TGTTCTGTTATGATCTAAAACTTCCAAAAGATTTCATTCCGAAAAATAAA                         GATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACACAAGTTGCAGAA
genomic: TGTTCTGTTATGATCTAAAACTTCCAAAAGATTTCATTCCGAAAAATAAAggtgagccgt ... taaaatatcaGATGGAGAAGTTGATAGCTTCAAGTTGATCCCTGTTACACAAGTTGCAGAA