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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGGtttgtgaatttctttatttgatttggtcattgatattataattggtgtttaaaatctagaaacctagggaaattgaaagatttcttacaatagttagcac...

Basic information

species Glycine max
transcript GLYMA18G07540.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G07540.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g05940.t01 (Vitis vinifera), 5'ss of exon 7
-TGAAATCCAGGATGATGGGGGATTCAACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGGtttgtgaatttctttatttgatttggtcattgatattataattggt-gtttaaaatctagaaacctagggaaattgaaagattt--cttacaa--tagttagcac
 ||||||| || |||||||| |||||||||||||||||||| || || || ||  |||||||||||   |||||||||  |   ||  |||| ||  ||| | | |   ||| ||| ||     | |  |   ||     ||     | || || | |||  ||  |||  | ||||    
GTGAAATCTAGAATGATGGGTGATTCAACCTACAAAAGCACTTTCGATTGTTTCTTCAAGACTTTGAAGAATGAGgttgatt--ttcttttaattcttttagccctct-tatgatagtttaccatattgatattatcgtgcttcaacattttaatgttttgactggcaaacttgttaa---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193440709|gb|FK405554.1|FK405554
EST:     AACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGG                         GATTTTTGGCCTTCTATAAAGGTTTCCTACCTAATTTTGGTCGAGTGGGAA
genomic: AACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGGtttgtgaatt ... gtattgcaggGATTTTTGGCCTTCTATAAAGGTTTCCTACCTAATTTTGGTCGAGTGGGAA
EST: gi|6482105|gb|AW201376.1|AW201376
EST:     AACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGG                         GATTTTTGGCCTTCTATAAAGGTTTCCTACCTAATTTTGGTCGAGTGGGAA
genomic: AACCTACAAAAGCACATTTGACTGCTTTCTCAAGACTTTGCTTAATGAGGtttgtgaatt ... gtattgcaggGATTTTTGGCCTTCTATAAAGGTTTCCTACCTAATTTTGGTCGAGTGGGAA