1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCGCGACTATGGTTGGATCAACAACATTCACCATGACATTGGCACCCATGTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaattctctatttcacaagaaattattgtatgtctgcctatgtgatctaagtcaattttcacataacacatgatcaaactttcttaattctttct...
species | Glycine max |
transcript | GLYMA18G06950.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAEST: gi|193411735|gb|FK378982.1|FK378982
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: GTTATCCATCACCTTTTCC-TCAAATTCCACATTATCATTTAATCGAAGC GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGEST: gi|208298438|gb|GE096215.1|GE096215
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAG
EST: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAEST: gi|193587612|gb|FK542647.1|FK542647
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTAEST: gi|208170209|gb|GD968800.1|GD968800
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTA
EST: GTTATCCATCACCTTTTCCCTCAAATTCCACATTGTCATTTAATC-AAGC GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAEST: gi|6913226|gb|AW394756.1|AW394756
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAEST: gi|208087287|gb|GD886453.1|GD886453
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: CCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAEST: gi|208200572|gb|GD996937.1|GD996937
genomic: CCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAEST: gi|208317446|gb|GE114855.1|GE114855
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC GACTAAAGCGGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAEST: gi|193395712|gb|FK362251.1|FK362251
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC GACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAAEST: gi|208327605|gb|GE124129.1|GE124129
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAGGAAAGTATTATCGTGAGCCTCAGAA
EST: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGC GACTAAAGCAGCAAAGGCAGTGCTAG
genomic: GTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaatt ... tcccacaataGACTAAAGCAGCAAAGGCAGTGCTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGCGACTATGGTTGGATCAACAACATTCACCATGACATTGGCACCCATGTTATCCATCACCTTTTCCCTCAAATTCCACATTATCATTTAATCGAAGCggtattaattctctatttcacaagaaattattgtatgtctgcctatgtgatctaagtcaattttcacataacacatgatcaaactttcttaattctttct
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