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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTAAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACCCTATTTGAGCATCTACACAgtgagtactgttacattcaaaacttgcatgattacattacaagaatgtgttttaagaatcattgcaacctaacatgcagcctttttggtgtatacttctg...

Basic information

species Glycine max
transcript GLYMA18G06670.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G06670.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g01510.1 (Oryza sativa), 5'ss of exon 8
TTTGTAAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACCCTATTTGAGCATCTACACAgtgagtactgttacattcaaaacttgcatgattacattacaagaatgtgttttaagaatcattgcaacctaacatgcagcctttttggtgtatacttctg---------
||  | || || ||||| || || | |    |  |||||||||| ||||||||||| || ||||||||||||  |||  |||| ||||||||| | || ||| ||     | | | | |   |||| |||  | |  |      ||   | | |||||  |    |   ||||  |||    || |  ||| ||  | ||         
TTCATGAACCTGATTGGTTACTGCGCATGCGAGGAGCCATTCACCAGGATGATGGTGTTCGAGTATGCTCCATGTGGTTCCCTCTTTGAGCATTTGCATAgtaagcctcctaataataatttcttgtatgtgttcgatcttg--attaatctgaagaacaaacaaactgtaactggcaattgttgta-tgtgtaaatttggttttgcag

upper sequence: GLYMA18G06670.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g18370.1 (Oryza sativa), 5'ss of exon 6
TTTGTAAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACCCTATTTGAGCATCTACACAgtgagtactgttacattcaaaacttgcatgatta-cattacaagaatgtgttttaagaatcattgcaacctaacatgcagcctttttggtgtat-----acttctg
||| | ||  |  |||| |||||||| ||  |  | || || || ||  ||||||| ||||| ||||||||||||||||| || |||||| |||| ||  || |||  | ||        |  |  |||||||  | | |  |  ||||     ||   ||  | ||   | |  || |   |  |     |||     || ||  
TTTATGAACTTGCTTGGCTATTGTGAGGAAGAGCAACCTTTTACCAGAGTGATGGTGTTTGAATATGCTCCAAATGGAACACTTTTTGAGTATCTGCATGgtaagtgttcttgtc-----agttatcatgattctcttcatcatcatgtccagaaattgtcggtacatttttatttgaacattggtcaagatatcagcaacctca-

upper sequence: GLYMA18G06670.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G135359_T04 (Zea mays), 5'ss of exon 5
TTTGTAAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACCCTATTTGAGCATCTACACAgtgagtactgttacattcaaaacttgcatgattacatt----acaagaa-tgtgtttta------agaatcattgcaacctaacatgcagcctttttggtgtatacttctg-------------------------
||| | ||  |  |||| || ||||| ||  |  | || || || ||  ||||||| ||||| |||||||||||||| || || ||||||||||| ||  || ||  | ||| |  |||  | || |    || |||     |||| || |||  || |      ||| |  |  ||   | || | | || || ||| |  | | ||  |                         
TTTATGAACTTGCTTGGCTACTGTGAGGAAGAGCATCCCTTTACCAGAGTGATGGTATTTGAATATGCTCCAAATGGGACACTTTTTGAGCATCTCCATGgtaagcgc-gttgctgtcatgagtttctcagtttcatctgtcacaaaaactgttcttcagcgtgtagagttttatcactatgactt-ctgcattgttgat-caaagtttggcaatgccttcctgatttcaccgcag

upper sequence: GLYMA18G06670.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G095588_T01 (Zea mays), 5'ss of exon 7
TTTGTAAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACCCTATTTGAGCATCTACACAgtgagt----actgttacat-tcaaaacttgcatgattacattacaagaatgtgt----tttaagaatcattgcaacctaacat--gcagccttttt-----ggtgtatacttctg------------------------------------------------------------------------
 || | || ||| | || |||||||||||  | || |||||||   |||||||||| || ||||||||| |||||||| | ||||||||||   | ||  ||||||    | |||    |  |     || || |  ||  ||    |    ||      |  | || | |||  | ||   ||  |||| |||        ||   ||  |  |                                                                         
CTTTTGAACCTTGTGGGTTATTGTGAAGACGAAAAACCATTCATTCGGATGATGGTGTTCGAGTATGCTTCAAATGGATCACTATTTGAGCGCTTGCATGgtgagttttaattgtgggttgcctttcttttcaggggtatgttgtggggtactgcaaagctgcaaaagccttgttatctgttattagcagtcttcacacaagggctcatgatgttagcagttgtgacaggaaaattcatataagcaggtttacaaattctaattatcatcaaaacattgttgttgcag

upper sequence: GLYMA18G06670.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g07030.t01 (Vitis vinifera), 5'ss of exon 8
TTTGTAAATCTTATTGGATATTGTGAAGAGAATAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACCCTATTTGAGCATCTACACAgtgagtactgttacattcaaaacttgcatgattacattacaagaatgtgttttaagaatcattgca----acctaacatg-cagcctttttggtgtatacttctg
||||| || |||||||| | |||||||||| ||||||| || || || |||||||||||||| |||||||| || ||||| || ||||||||||| |||||||||||        | |  ||  |  |     |       || || | ||| ||| |    || |    |  ||  ||  ||   | | | |   | ||     
TTTGTGAACCTTATTGGGTTTTGTGAAGAGGATAAGCCTTTTACGAGAATGATGGTTTTTGAATATGCTCCTAACGGAACGCTCTTTGAGCATCTGCACAgtgagtatctagctttcctcaatatatacagccatgc----agcatatttttcaaggaaatatgtacttcatttagtatatcatgatctattgcacaaaccaac-