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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtatttttggagtttgattttctttgaatttgtaatatgatctcttcaccctgtaattgctgaacattatacaaactggcatgtgaattgcag

Basic information

species Glycine max
transcript GLYMA18G05840.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os07g48200.1 (Oryza sativa), 5'ss of exon 5
TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtatttttggagtt-tgattttctttgaatttgtaatatgatctcttcaccctgtaattgctgaa-cattatacaaac-tggcatgtgaattgcag----
||  || |||||  | || ||  | |||||||||||  | || |||||||||||||| || || || || |||||||| |||||||||||||| |||||||||||    |    |  || | ||  | ||     || |      |   |    ||| |    |||||   |    | |  | || ||   |     
TTCAAATTCCACCATTGTCCCCCTGTTTGAGAAGGTTCTAAGCGCCAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTACCAAAAGCCTGTGCGGAGgtatttttttgttcacaaccttttgtggttctgcctcctgttaataaaattttagtgttgttacctcattactgatttatcgtttttgtatcatattccc

upper sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G172621_T01 (Zea mays), 5'ss of exon 5
TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtatttttggagtttgatt----ttctttgaatttgtaat-atgatctcttcaccctgtaattgctgaacattataca-aactggcatgtgaattgcag-
||  || |||||  | || ||||| |||||||||||  ||||||| ||||||||||| || || || || |||||||| |||||||| ||||||||||||  ||  |  |||| ||      |||| | | |||  | || || | ||     | |   | |  ||  || |    ||   ||||   ||       
TTCAAATTCCACGATTGTTCCATTGTTTGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCTGAGgtaacttcagcatttgtttgggtccctttaagtatgtttttattatatattgctgatttgccttcaaaaagttgtttggaaagagcatcaaaagcatttg

upper sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 5
TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtatttttggagtttgattttctttgaatttgtaatatgatctcttcaccctgtaat---tgctgaacattatacaaactggcatgtgaattgcag----
||  || |||||  | || ||||| || ||||||||  ||||||| ||||||||||| || || || || |||||||| |||||||| ||||| ||||||  |||    | || ||  |||    ||  |||| | | |   |     | || |   |  ||   |||     |  || | |   ||    |     
TTCAAATTCCACAATCGTTCCATTGTTCGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgtaactttaacatctgtttggcttccttttcataatttaaacatgtttttttttattgtatattgccgattgcctgatttgtcttccaaaagttatttgg

upper sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G30470.1 (Arabidopsis thaliana), 5'ss of exon 5
TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtatttttggagtttgattttctttgaatttgtaatatgatctcttcaccctgta-attgctgaacattatacaaactggcatgtgaattgcag
|||||| |  |   | || ||  | ||||||||     | |||||||||||||| ||||| ||||| ||||| ||||| |||||||||||||| ||||||  |||    ||    |     ||  ||| |  | |  |      |   |||| | |  |||    | |    | ||| || |         
TTTGAATTTGAACATTGTACCTCTCTTTGAGAAAACTCTTAGTGCCAGTGATGCTGGTCGCATTGGTCGTCTAGTTCTTCCAAAAGCCTGTGCAGAGgtaaatttcccattcctatggtgatgtcttt-tcttgtccttgaaatattttgtagagttatgactgatgtctgcattggtatatag-------

upper sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 5
TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtat-ttttggagtttgattttctttga-------atttgtaatatgatctctt-caccctgtaattgctgaacattatacaaactg-----gcatgtgaattgcag----------
|||||| |||||  | ||||||||||| ||||||||  ||||||| |||||||| ||||||||||| ||| | || ||||||||||| |||||||| |||  ||||  |   |  |  || |  |        ||| |  |||| |  |||      | || ||  || |  || | |   ||         | | || || |           
TTTGAATTCCACCATTGTGCCATTATTCGAGAAGGTTCTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTCCTCCCAAAAGCATGTGCTGAAgtaagttttcaaaagtagtcatcctcaatacctttgtttcttgtatgctagcttgtgttatttattttgtggaggtttttcttccttttcatatgtataaactgtaagtcaatacag

upper sequence: GLYMA18G05840.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S42_132V6.1 (Physcomitrella patens), 5'ss of exon 7
TTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGgtatttttggagtttgattttct--ttgaatttgtaatatgatct---cttcaccctg-taattgctgaacattatacaaactggcatgtgaa-ttgcag-
| || || ||||  |    || || || |||||  || |||||||||| ||||| ||||| ||||| ||| | || || |||||||| ||||||||||||     |||||||   ||| |  ||   |  | | |   || |   ||| |   || || ||     |  || ||  ||  || | | |   ||| |  
TATGCAAACCACCATCACTCCCTTGTTCGAGAAAATGCTGAGTGCCAGCGATGCTGGTCGGATTGGTCGTTTGGTGCTTCCAAAAGCATGTGCTGAGgtaggcacggagtttatctttttaattacctaagaagtgcaatgtgcgctttatattgatagttttcttatgtt-taagaaaaggaaggcgttcttgtacc