Sequence
atgc intronic sequence ATGC exonic sequenceTGAAGAAGATGCAAGGTTTGAAGCAATATTGCTGAGAGATGAAAAGCAGTGTGCAGAGCATGTCATGTTGGTTGATTTGGGACGCAATGATGTTGGAAAGgtttgttataaatattcaatataatggatactcctatttgtttttttcctgttcaaggtgtcttgaagcaatagcttggtcaattatattgttcatttaa...
Basic information
species | Glycine max |
transcript | GLYMA18G03270.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G03270.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g61120.1 (Oryza sativa), 5'ss of exon 8
TGAAGAAGATGCAAGGTTTGAAGCAA-TATTGCTGAGAGATGAAAAGCAGTGTGCAGAGCATGTCATGTTGGTTGATTTGGGACGCAATGATGTTGGAAAGgtttg---ttataaatattcaatataat---ggatactcctatttgtttttttcctgttcaaggtgtcttgaagcaatagcttggtcaattatattgttcatttaa
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AGCAGAAGACA-AAGTTTTAGAACAACTGCTGTTGAGTGATGGAAAGCAGTGTGCTGAGCATATTATGTTAGTAGATCTTGGACGGAATGATGTTGGAAAGgtttgattttccatgcatttgttttgttctcaatcaattccattcctctgttttctgcatacaaaaaa--aaaacaata--ttattcaattggacaacttatag--
upper sequence: GLYMA18G03270.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g15780.4 (Oryza sativa), 5'ss of exon 8
TGAAGAAGATGCAAGGTTTGAAGCAATATTGCTGAGAGATGAAAAGCAGTGTGCAGAGCATGTCATGTTGGTTGATTTGGGACGCAATGATGTTGGAAAGgtttgt--tataaatattcaata--taatggatactcctatttgtttttttcctgttcaaggtgtcttgaagcaatagcttggtcaattatattgttcatttaa-
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GAAGGAAGATGAAATGCAAGAGCAACAGCTACTAAGTGATGAAAAACAGTGTGCTGAACATATTATGCTTGTAGATTTGGGAAGGAATGATGTTGGAAAGgtttgtgttcttttttttcgatggctgagtcatggttgcattaatttgacagatttgttaggaatgtgttaacaacttttcttatgattactttctacttggcag
upper sequence: GLYMA18G03270.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G55870.1 (Arabidopsis thaliana), 5'ss of exon 8
TGAAGAAGATGCAAGGTTTGAAGCAATATTGCTGAGAGATGAAAAGCAGTGTGCAGAGCATGTCATGTTGGTTGATTTGGGACGCAATGATGTTGGAAAGgtttgt-----tataaatattcaatataatggatactcctatttgtttttttcctgttcaaggtgtcttgaag--caatagcttggtcaattatat--tgttcatttaa-------------------------------------------------------------------------------
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CGAGGAGGATCAAATGTTGGAGGAGGCACTTTTAAAAGATGAAAAACAGTGTGCAGAACACATCATGCTCGTTGACTTGGGTCGCAATGATGTTGGAAAGgttagtctgtttctcaggatcaaatctggtttata-tattcttggtttaagcaatgatgaaaaacgatcaatgatcattaacttacgtacttctatgccaatcttttctcttacaaagaatatttcaaatttgaacatatagtattgtctaatatctcattggctctctctgggccttatgaaaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193338190|gb|FK304293.1|FK304293EST: ATTTGGGACGCAATGATGTTGGAAAG GTTGCAAAAAGTGGTTCTGTCAAAGTTGAAAAGCTTATGAATGTTGAACGA
genomic: ATTTGGGACGCAATGATGTTGGAAAGgtttgttata ... tcttttgtagGTTGCAAAAAGTGGTTCTGTCAAAGTTGAAAAGCTTATGAATGTTGAACGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAAGAAGATGCAAGGTTTGAAGCAATATTGCTGAGAGATGAAAAGCAGTGTGCAGAGCATGTCATGTTGGTTGATTTGGGACGCAATGATGTTGGAAAGgtttgttataaatattcaatataatggatactcctatttgtttttttcctgttcaaggtgtcttgaagcaatagcttggtcaattatattgttcatttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA